>PF08537 (345 residues) MLESVRGFIGDILGYQATDPRKKEYGSLDDVRTSNRQGGSGSHARLDRNRLRRRRAIASN GDSANSRKYVRPQDGNRVNKMRNPSARTGPGTLSKLMKSIKNVFSTEDQDLTLMQQACGN TNAMLPPAARRGAHQGAEGRKKLRDRIVRSEAFKRKLLEIKYDDRMLEQVRRGRSVSGSR RRIGEGYQGIEPLQDDKVGLLQRKLQELDSKVQDMDKELQITQKKLKFAQEKNTLLESLL DDANIDSEYVKSRRDIKNLQKENLKPEAELPPSPRRSVNPLFTSSPMRKPPSVQDQEQEQ VQGQGQDPTQNFYSKYPKIPETELLVQGRDRTSMSPIRIDYSKYS |
|
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 | | | | | | | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | MLESVRGFIGDILGYQATDPRKKEYGSLDDVRTSNRQGGSGSHARLDRNRLRRRRAIASNGDSANSRKYVRPQDGNRVNKMRNPSARTGPGTLSKLMKSIKNVFSTEDQDLTLMQQACGNTNAMLPPAARRGAHQGAEGRKKLRDRIVRSEAFKRKLLEIKYDDRMLEQVRRGRSVSGSRRRIGEGYQGIEPLQDDKVGLLQRKLQELDSKVQDMDKELQITQKKLKFAQEKNTLLESLLDDANIDSEYVKSRRDIKNLQKENLKPEAELPPSPRRSVNPLFTSSPMRKPPSVQDQEQEQVQGQGQDPTQNFYSKYPKIPETELLVQGRDRTSMSPIRIDYSKYS | |||||||||||||||||||
1 | 1sjjA | 0.11 | 0.10 | 3.81 | 1.00 | MUSTER | MEKLASDLLEWIRRTIPWLENRAPENTMQAMQQKLEDRDYRRLHKPPKVQEKCQLEINFNTLQTKLRLSNRPAFMPSEGKMVSDINNA--GGLEQAEKGYEEWLLNEDHLAEKFRQKASIHESWTDGKEAQQKDYETATLSEIKALLKKHEAFESDLAAHQDRVEQIAAIAQ--ELNELDYYDSPSVNARCQKICDQWDNLGALTQKRREALERTEKLLETIDQLYLEYAKRAAPFNNWMEGAMQDTFIVHTIEEIQGLTTAHEQFKATLPDADKERQAILGIHNEVSKIVQTYHVNMAGTNPYTTITPQEINGKWEHVRQLVPRRDQALMEEHARQQQNERLRK | |||||||||||||
2 | 2tmaA | 0.12 | 0.10 | 3.48 | 1.55 | Neff-PPAS | ------------------------------------------------DAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIES---RAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTSI----------- | |||||||||||||
3 | 6ek4A | 0.12 | 0.10 | 3.61 | 1.07 | PROSPECTOR2 | LSQAVKNIWRLSHQQKSGIEIIQEK--TLRISLYSRDLDEAARASVPQLQTVLRQLPPQDYFLTLTEIDTELEDPELDDETRNTLLEARSEHIRNLKKDVKGVIRSLRKEANLMASRIADVNVVILERLESSLKEEQERKAEIQADIAQQEKNKAKLVVDRNKIESQDVIRQYNLADMFKDYIPNISLDLANPKKELIKQLADARAKLDERINQINKDCDDLKIQLKGVEQRIAGIEDVHQIDKERTTLLLQAAKLEQAWNIFAKQLQNTIDGK---------------IDQQDLTKIIHKQLDFLDDLALQYHSMLL--------------------------S | |||||||||||||
4 | 6el1O | 0.10 | 0.08 | 3.03 | 0.94 | SPARKS-K | NFKIFSQGVKNISHLFKTTGVEVLQEKALRVSLYSQRLDVRESLSSLQVKLENTLALTYFTTLEEIDEALISQDIDEESKSEMRKERINIKNLSNDITQLKQLFIEKTELLDKSSSDLHNVV--IIEGTDKVLQAEQLRQKQLTEDIATKELERKEIEKKRDKIIEALDVIREHNLVDAGENLSELDLAKPEILTDARKKLDNQIDTASTRLTELNRQLEQSEKLIAGVNAVIKIDQEKSAVVVEAEKLSRAWHIFIHEITALQGTSLN--------------------EVELSKPLIKQQIYLESLIKQL---------------------------------- | |||||||||||||
5 | 2tmaA1 | 0.11 | 0.05 | 1.77 | 0.95 | FFAS-3D | -------------------------------------------------------------------------------------------------DAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEADVA----------SLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKD--EEKMEIQEIQLKEAKH------------------------------------------------------------------------------------ | |||||||||||||
6 | 5nenA1 | 0.09 | 0.03 | 1.20 | 0.39 | HHpred | ---------------------------------------------------------------------------------------------------------------------------------------------------AQVDSLRDQYYTTLATEGRLLAERDGLSIVTFSPILKPRFASRRQALQSEIDGYKQSMDGIRFQLKGLQDSRGNKQIQLSSLREQMNSMKQLAADGYLPNRYLEVQRQFAEVNSSI---------------------------------------------------------------------------------- | |||||||||||||
7 | 1st6A | 0.07 | 0.07 | 2.94 | 0.97 | MUSTER | LISAMKIFVTTKNTKSQGIEEALKNFTVEKMSAEINE-QLTSWDEDAWASKDTEAMKRALALIDSKMNQAKGWLRDPNAPPGDAGEQAIRQILDEAGKAGELCAGKERREILGTCKTLGQMTDQLADLRARGQGATPMAMQKAQQVSQGLDLLTAKVENAARKLEAMTNSKQAIAKKIDAAQNWLADPNGGSEGEEHIRGIMSEARKVAELCEE-PKERDDILRSLGEISALTAKLSDLRRHGKGDSEARALAKQIATSLQNLQSKTNRAVANTRPVKAAVHLEGKIEQAQRWIDNPTVDDRGVGQAAIRGLVAEGRRL--ANVMMGPYRQDLLA-VDQLAAQLA | |||||||||||||
8 | 2oexA | 0.10 | 0.06 | 2.06 | 0.64 | CNFpred | ADGQVKECYQSHRD------------TIVLLCKPEPELNAAIPSANPAKTMQGSEVVN---------------------------------VLKSLLSNLDEVKKEREGLENDLKSVNFDMTSKF--LTALAQDGVINEEALSVTELDRYGGLTTKVQELKKQEGLLKNIQVSHQEFSKMKQ-----------SNNEANLREEVLKNLATAYDNFVELVANLKEGTKFYNELTEILVRFQNKC---SDIVFARKTER---------------------------------------------------------------------------------------- | |||||||||||||
9 | 3u1aA | 0.15 | 0.03 | 1.17 | 0.45 | HHsearch-2 | ----------------------------------------------------------------------------------------------------------------------------------------------------HMDAIKKKMQMLKLDKENAEQAEADKK-----------------AAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKA------------------------------------------------------------------------------------------------------ | |||||||||||||
10 | 6el1O | 0.08 | 0.07 | 2.74 | 1.48 | Neff-PPAS | FSQGVKNISHLA--QFKTTGVEVLQEKALRVSLYSQRLDVIVRESLSSLQVKLENTLALTYFTTLEEIDEALISQDIDEESKSEMRKERINIIKNLSNDITQLKQLFIEKTELLDKSSSDLHNVIIEGTDKVLQAEQLRQKQLTEDIATKELERKEIEKKRDKIIEALDVIREHNLVDAFKDLIPTGENGQFSEGLKYIDLTDARKKLDNQIDTASTRLTELNRQLEQSEKLIAGVNAVIKIDQEKSAVVVEAEKLSRAWHIFIHEITALQGTSLNEVELSKPLIKQQIYLESLIKQL----------------------------------------------- | |||||||||||||
|
|
References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |