>PF08318 (322 residues) LQQATMQLRHLITQKFDESVKKDDLASVERFFKIFPLLGMHDHGIEKFSQYICHKLNAKA QKELRTSMDTAKAEKRTVVAFADTLTILLENIARVVEVNQPIIETYYGKGRLHQMVRVLQ EECDQEVKICLLEFNKGRHIQRRVAQINEYIKTGGSGGSSVAGHYRKPSGGSMDKLNPKD IDSLIGEITIMHSRAELYVKFIKRRVARDLDSSTLDEEKKRTALAGVEKCLKDSDLSRQM QELLGIYLLFERFFMEESVLKAIALDAHEPGQQCSSMIDDVFFIVRKCIRRANTTQSLDG ICAVINNAATELENDFIAAIKE |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | LQQATMQLRHLITQKFDESVKKDDLASVERFFKIFPLLGMHDHGIEKFSQYICHKLNAKAQKELRTSMDTAKAEKRTVVAFADTLTILLENIARVVEVNQPIIETYYGKGRLHQMVRVLQEECDQEVKICLLEFNKGRHIQRRVAQINEYIKTGGSGGSSVAGHYRKPSGGSMDKLNPKDIDSLIGEITIMHSRAELYVKFIKRRVARDLDSSTLDEEKKRTALAGVEKCLKDSDLSRQMQELLGIYLLFERFFMEESVLKAIALDAHEPGQQCSSMIDDVFFIVRKCIRRANTTQSLDGICAVINNAATELENDFIAAIKE | |||||||||||||||||||
1 | 5h11A | 0.11 | 0.11 | 3.89 | 1.42 | FFAS-3D | -------LGSQLIQEFTAAQRRGEIGRMREVAAVLLHFKGYAHCVDVYIKQVFEDIAILCQRVNKQVGE---VFCSPETVMAKLIQSIFEKIQAHVKE---RLDETRNSDQYLKNLYDLYTRTTALAAKLLSKLIKNIFIDMERQYLQNRSGMILQRYYDSKNHQKRIDTHGETLLSQEVVVNLLQETRHAFERCNKLVDHIDYALEIGLSAIPSADQQANTIFHLFDKQFNDHEVIEQMEVKLDTGIDRTLNCMIGQMKYILTTDENNVMIQYTTACSKVCAYVGKQVERVRRSMDGKNVDTVLTELGVRFHRLIHEHLQQ | |||||||||||||
2 | 5yfpE | 0.10 | 0.08 | 2.98 | 1.96 | HHpred | IEKYSEMMENELLENFNSAYRENNFTKLNEIAIILNNFNGGVNVIQSFINQHDYFIFIK-NV---KFKEQLIDFENHSVIIETSMQNLINDVETVIKNESKIVKRVFEEKATHVIQLFIQRVFAQKIE--------------------------------------------------PRFEVLLRNSLSISN--LAYVRILHGLFTLFGKTKSLIDYFQLLEI-DDSNQILSTTLEQCFADLFSHYFGIEKRSLEAILVDMTSKSPNSPANYSLNDVDSMLKCVVESTARVMELIP----NKAHLYILEILKDSYMEI--- | |||||||||||||
3 | 5yfpE | 0.10 | 0.08 | 3.07 | 2.62 | HHsearch-2 | IEKYSEMMENELLENFNSAYRENNFTKLNEIAIILNNFNGGVNVIQSFINQHDYFIFIK-NV---KFKEQLIDFENHSVIIETSMQNLINDVETVIKNESKIVKRVFEEKATHVIQLFIQRVFAQKIEP--------------------------------------------------RFEVLLRNSLSISN--LAYVRILHGLFTLFGKTKSLIDYFQLLEI-DDSNQILSTTLEQCFADLFSHYFGIEKRSLEAILVDMTSKSPNSPANYSLNDVDSMLKCVVESTARVMELIP----NKAHLYILEILKI-MFLGIVD | |||||||||||||
4 | 5yfpE | 0.10 | 0.08 | 2.99 | 4.56 | HHsearch | IEKYSEMMENELLENFNSAYRENNFTKLNEIAIILNNFNGGVNVIQSFINQHDYFIFIK-NV---KFKEQLIDFENHSVIIETSMQNLINDVETVIKNESKIVKRVFEEKATHVIQLFIQRVFAQKI----E----------------------------------------------PRFEVLLRNSLSISN--LAYVRILHGLFTLFGKTKSLIDYFQLLEI-DDSNQILSTTLEQCFADLFSHYFGIEKRSLEAILVDMTSKSPNSPANYSLNDVDSMLKCVVESTARVMELIP----NKAHLYILEILVDSYMEIAL- | |||||||||||||
5 | 6ek4A | 0.10 | 0.10 | 3.52 | 1.04 | PROSPECTOR2 | LSQAVKNIWRLSHQQK-----SGIEIIQEKTLRISLYSRDLDEAARASVPQLQTVLRLTLTEIRNTLLEARSEHIRNLKKDVKGVIRSLRKEANLMASRIADVSNVVILERLESSLKEEQERKAEIQADIAQQEKNKAKLVVDRNKIIESQDVIRQYNLADMFKDYIPNISDKLDLANPKKELIKQAIKQGVEIAKKYIELADARAKL--------DERINQINKDCDDLKIQLKGVEQRIAGIEDVHQIDKE--RTTLLLQAAK-----------LEQAWNIFAKQLQNTIDGKIDQQDLTKIIHKQLDFLDDQYHSMLLS | |||||||||||||
6 | 5yfpE | 0.10 | 0.08 | 3.07 | 1.39 | SAM | IEKYSEMMENELLENFNSAYRENNFTKLNEIAIILNNFNGGVNVIQSFINQHDYFIFIKNVKFKEQLI----DFENHSVIIETSMQNLINDVETVIKNESKIVKRVFEEKATHVIQLFIQRVFAQKIEPR--------------------------------------------------FEVLLRNSLSISN--LAYVRILHGLFTLFGKTKSLID---QLLEIDDSNQILSTTLEQCFADLFSKYFGIEKRSLEAILVDMTSNSPNSPANYSLNDVDSMLKCVVESTARVMELIP-NKAHLYILEILKIMFLGIME---- | |||||||||||||
7 | 5lj3S1 | 0.11 | 0.11 | 3.81 | 1.36 | FFAS-3D | LEELREYQRRK-RTEYEGYLKRLDMGQWIRYAQFEIEQHDMRRARSIFERALIDAELNHARNLMNRAISTLPRVDKLWYKYLIVEESLVEIVRSLYTKFVDFEIRQKNWNGVREIYSKYVMAHMQTWLKWVRFENRHGNTEFTRSVYSLAIDT-------------VANLQNLQIWSDMEVAKLVNSFAHWERSSALYQVAIELDFEKQFNSIEETISYKRKMDYETIQTFEKAVQWKRYIYLWMRYICYVELLEEELFQRLIDDILIRDVPKARKILGKAIYIVRKIYEKFIEFQDLQIWSQYGELEEDRVRGIYTIALDE | |||||||||||||
8 | 2fji1 | 0.14 | 0.04 | 1.37 | 1.05 | HHpred | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SHMGDKEKETLFKDYLNLIVVKMTEWIGNLEKAEFPSDGLLFLDGTKTCFQMFTQQVEVAAGTNQAKILVGVVERFSDLLTKRISEEIKK | |||||||||||||
9 | 2fji1 | 0.09 | 0.08 | 3.16 | 1.38 | HHsearch-2 | LNLIVKTCFQMFTQQVEVAAGTNQAKILVGVV-------------ERFSDLLTKRISEEIKKQINYYPESITPEDECPGGLVEYLIAVSNDQMKAAVAISSKYGKLVSKVYEKQITNHLE--------GTLDGFAEVAQSLGLITLMFDDLRKPYQEIFS-------KTWYMGSQAQADTLDEYLLDIKPQM-NSVLFVNFIDNVIGETIILTALSF----EHSFKNKNNKFLEAMKRDFEIFYQLFVKVLDGLITQNFTVMEFFMDLSCE-PIDSILDIWQKYLEIDLLVGILCRDVSERKKIVQQATEMLHEYRRMEAVD | |||||||||||||
10 | 2fji1 | 0.14 | 0.04 | 1.37 | 2.28 | HHsearch | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GSHMGDKEKETLFKDYLNLIVVKMTEWIGNLEKAEFPSDGLLFLDGTKTCFQMFTQQVEVAAGTNQAKILVGVVERFSDLLTKRISEEIK- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |