Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180
| | | | | | | | | |
| Seq | MSYQYNKAWKQILHILALMFKAAGATCHEFMVKCLQSLAELRDSYNFPYVNELDYAVGAAVRTMGVDVVLRHVPYQISFNEKGNEIKRSWMLPVLKANIQNASIGFFIEHFLPLASQCRKKSEEFRQSDSTAAAVSYDLLQTQIWSLLPSFCNKPKDIESFPKLAKVLGNVLINFKDLRLTVMLALRKLMEDN |
1 | 5ifeC | 0.09 | 0.09 | 3.36 | 0.94 | SPARKS-K | | SPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALG---IPSLLPFLKAVIKIVQQIAILMGCAILPHLRSLVEIIEHGLVLAIAALAETPYGIESFDSVLKPLWKGIRQHGKGLAAFLKAIGYLIPLM |
2 | 5vchA2 | 0.07 | 0.07 | 2.73 | 1.09 | FFAS-3D | | -----EDIRVFAVQFVTSALVYRKSKINQAGPEITLAALKVTNEDENTPALTALRLISNASGELSPSQVGVPIIEHLPTLSSSNPFERRSILLAISVLVTGSP-----DYTLSQFDKIIPATVTGLKDSEAVVQLAALKCIVQLSTNLQDEV-----ARYHEQYLPLVIDIIDSHVVIYKYATLALDGLLE-- |
3 | 1b3uA3 | 0.11 | 0.10 | 3.56 | 0.85 | MUSTER | | AEDAKWRVRLAIIEYMPLLAGQLGVEFFD--EKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAG--------PV-------ANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQQDVDVKYFAQEALTVLSLA- |
4 | 5vchA | 0.10 | 0.10 | 3.79 | 0.89 | CNFpred | | ASETEATLLDVALDIYVALSTNLVGGFAQVFTTAKPVILQLCQSKSKNKRSFAVGALSEIALGM-IQELLEALIISLTNDKLEVRCNASYGVGLLIEYS-SFDVSAIYSPVLKSLYEILSVADEKATEDDEATKEIVDRTFSNVCGCVARMILKHQNLVPLEHTIPALLSHLPFAFEEYDPIFKLFLKLFQEQ |
5 | 5ifeC | 0.10 | 0.10 | 3.80 | 0.57 | HHsearch-2 | | MSPLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRLGIPSLLPFLKAVCKSCAILPHLRSLVEIIEHGLVISALAIAAATPYGIESFDSVLKPLWKGIGYLIPLAEYAYYTREVMLILIREFQSDEEMKKIVLKVVKQCCGTD |
6 | 1b3uA3 | 0.11 | 0.10 | 3.57 | 0.85 | Neff-PPAS | | AEDAKWRVRLAIIEYMPLLAGQLGVEFFD--EKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPV--------------ANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQQDVDVKYFAQEALTVLSLA- |
7 | 3w3tA2 | 0.14 | 0.13 | 4.41 | 0.78 | HHsearch | | MSEPMPEITQVYHNSLVNGIKVMGDNCEDQLAAFTKGVSANLTDTDEDLLDEINKSIAAVLKTTNGH-YLKNLENIWPFLLDNEPILVIFALVVIGDLIQYEQTASMKNAFIPKVTECLI-------SPD------ARIRQAASYII-GVCAQAPSTYDVCIPTLDTLVQIVDENRSSTENASAAIAKILYA- |
8 | 5vchA3 | 0.11 | 0.11 | 3.92 | 0.96 | SP3 | | ASETEATLLDVALDIYVALSTNLVGGFAQVFTTAKPVILQLCQSKSKNKRSFAVGALSEIALGRDIQELLEAL-IISLTNDKSLEVRCSYGVGLLIEYS-SFDVSAIYSPVLKSLYEILSVADEKNLEDDEATKEIVDRTFSNVCGCVARILKHQNLVP-LEHTIPALLSHLNTAFEEYDPIFKLFLKLFQEQ |
9 | 5cwmA | 0.13 | 0.12 | 4.14 | 0.84 | PROSPECTOR2 | | DPEDELKRVEKLVKEAEELLRQAKEKGSEEDLEKALRTAEEA-------AREAKKVLEQAEKEGDPEVALRAVELVVRVAEL--------LLRIAKESGSEEALERALRVAEEAARLAKRVLELAEKQGDPEVALRAVELVVRVAELLLRIAKESGSEEALERALRVAEEAARGDPEVARRAVELVKRVAEER |
10 | 5gm6G | 0.11 | 0.09 | 3.36 | 0.52 | FFAS03 | | -----------MIKTIDRVLYQLGDLTKPYVHKILVVAAPLLIDEDPMVRSTGQEIITNLSTVAGLKTILTVMRPDIENEDEYVRNVTSRAAAVVAKALGVNQLLPFINAAC---------HSRKSWKARHTGIKIVQQIGILLGIGVLNH---------LTGLMSCIKDCLMDHVPVRIVTAHTLSTLAEN- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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