Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160
| | | | | | | | |
| Seq | MSKEQFLKELSSHLRKLPDEERKDILFDYEEHFQFGTEEGKTESEIIKGLGSPKVIAKELLAMYRFDEMKKDPSTSNVTRAVMAAIGLSLFNFIIVLGPLVAIIAFIFSFWVGGIASVVTPFFVIGKVFMGTFIWLDLFVSITFVGVGLLLCIVAYYSTKWFKRLCVRYVIWNFKMIKG |
1 | 4uosA | 0.10 | 0.09 | 3.55 | 1.03 | SPARKS-K | | EEVKKMLEKMIEEIKKMAIKKVKEMLEKMIKEIKKMLENGEDSEKILKKAKEAEKILKMVIELAEKILKKAKEMAEKILKKVKELGVKKMLEKMIEEIKKMLEKAIKKVKEMLEKMIKEIKKMLENGEDSEKILKKAKEMAEKILKMVIELAEKILKKAKEMAEKILKKVKELGVG--- |
2 | 6me6A | 0.14 | 0.13 | 4.61 | 0.92 | FFAS-3D | | ADLEDNWETLNDNLKVINAAQVKDALTKMRAAALDAQKATPDDALKLANEGKVKEALKTTRNAYIQKYLGDGARPSWVAPALSAVLIVTTAVDVVGNLLVILSVLFLVSLALANLVVAFYPYPLILVAIFGEEHCKASAFVMGLSVIGSVWNITAIAIDRYLYTPLHICLIWLLTVV-- |
3 | 6iu3A | 0.13 | 0.11 | 3.69 | 0.38 | HHpred | | -EADNYARELKREIIRVPDTEAAEVAEILARY-------GIEPHEYG-------PVVNALRKKPQLMKFELGLEKPDPKRALQSTIAIAYVLGLVPLIPYMFIPVARKAVVASVILTL--MALLIFGYAGDNK---PFKSALQTALIGAIASAAAFGMAKAVQSENL------------ |
4 | 4uosA | 0.12 | 0.12 | 4.16 | 0.85 | MUSTER | | M-LEKMIEEIKKMLEKA-IKKVKEMLEKMIKEIKKMLENGEDSEKILKKAKEMAEKILKMVIELAEKILKKAKEMAEKILKKVKELGVDNEEVKKMLEKMIEEIKKMLEKAIKKVKEMLEKMIKEIKKMLENSEKILKKAKEMAEKILKMVIELAEKILKKAKEMAEKILKKVKELGVG |
5 | 3rkoB | 0.09 | 0.08 | 3.01 | 0.92 | CNFpred | | LNFREMVELAPAHFADGNNMLMWATLMLLGGAVGKSAQ----QTWLADAMAGPTPVSALIHAA---------------TMVTAGVYLIARTHGLFLMTPEVLHLVGIVGAVTLLLAGFAALVQTDIKRVLAYSTMSQIGYMFLALGVQAWDAAIFHLMTHAFFKALLFLASGSVILACH |
6 | 2o4tA | 0.14 | 0.06 | 2.09 | 0.48 | HHsearch-2 | | LPKQIVYKEIQKYLKPVELNEGIGLLSEILGFFEEGAAAGKGVLDVTGT--DVAAFCDALIGDSKT--YADL--YQESIQQHVD----------------------------------------------------------------------------------------------- |
7 | 5cwqA | 0.10 | 0.10 | 3.69 | 0.99 | Neff-PPAS | | RRLQEARKRSEEARERGDAEALIEEARAVQELARVACERG-NSEEAERASEKAQRVLEEARKVSEEAREQG---DDEVLALALIAIALAVLALAEVACCRGNSEEAERASEKAQRVLEEARKVSEEAREQGDDEVLALALIAIALAVLALAEVACCRGNKEEAERAYEDARRVEEEARK |
8 | 2o4tA | 0.13 | 0.06 | 1.94 | 0.74 | HHsearch | | LPYQIVYKEIQKYLKPVELNEGIGLLSEILGFFEEGAAAGKGVLDVTGT--DVAAFCDALIGDSKT-YADL---YQESIQQHVD----------------------------------------------------------------------------------------------- |
9 | 3ifgP1 | 0.11 | 0.11 | 3.81 | 0.79 | SP3 | | MGAAETARAIEAAQAMKTAKERAAILRRWFDLVIANSDDGKPLAEAKGEIAYAASFIEWFAEEGKRVAGDTLPTPDANKRIVVVKEPIGVC--AAITPPAAMIARKVGPALAAGCPIVVKP--------AESTPFSALAMAFLAERAGVVVIGDPKAIGTEITSKLTAVGRLLMAQSAP |
10 | 5cwmA | 0.11 | 0.11 | 4.01 | 0.84 | PROSPECTOR2 | | -DPEDELKRVEKLVKEAEELLRQEDLEKALRTAEEAAREAKKVLEQAEKEGDPEVALRVVRVAELLLRIAKESGSEEALERALRVAEEAARLAKRVLELAEKQGDPEVALRAVELVVRVAELLLRIAKESGSEEALERALRVAEEAARLAKRVLELAVARRAVELVKRVAELLERIARR |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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