>PF07919 (604 residues) VILKGEDSVSCLAASFVFAKSEGNVGEPLQSQLVIRSCAQAGSSPIRLTEVKVVFEGSIR PIKLLPSEDATSSSSTSCEIISVPLQDSAKVDASSVRSPTAGLSLMAGFTNLSFNPKQTR AFNLVSVPREPGEARVASITLRIEEENFDLACIISEQNREESVWWRMGKQGPISRRTGKD RDTSVAQILPKPPKVRITTPNLRNHYYTDEKVVFDVQIDNDEDEAAEIDVEMKLFGHTGT SATFSWINETAADSEASEDAGSSTPSTPIEGDSSALSKQCTVGTLGRGASRTLSVLFTNT TQPLDYEVEISAFYHLVSDIETQIFKTVSLDLSFIRPFEANYEFLPRIHPAPWPDFFHCD DSPSEDSEAKEQKLNGLQQLWCLNSKMVSFALEPLIIEEVNVTLLGITAGNVCKIGPETL KSPETPTIGPEELRESEFAIEIQRHALDDRQASTLNLSLDIRWRRPDDDDGGPQSSSTTS TLPIPRFLLPLGEPRVLASATPSPTFPGFLHLDYTLENPSMHFLTFNLTMEASDQFAFHG PKSTTVQLVPLSRHTVRYNLLANVTGTWIQPQLVVVDSYFNKTLRVLPTEGMRGDKKGIL VWVD |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 500 520 540 560 580 600 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | VILKGEDSVSCLAASFVFAKSEGNVGEPLQSQLVIRSCAQAGSSPIRLTEVKVVFEGSIRPIKLLPSEDATSSSSTSCEIISVPLQDSAKVDASSVRSPTAGLSLMAGFTNLSFNPKQTRAFNLVSVPREPGEARVASITLRIEEENFDLACIISEQNREESVWWRMGKQGPISRRTGKDRDTSVAQILPKPPKVRITTPNLRNHYYTDEKVVFDVQIDNDEDEAAEIDVEMKLFGHTGTSATFSWINETAADSEASEDAGSSTPSTPIEGDSSALSKQCTVGTLGRGASRTLSVLFTNTTQPLDYEVEISAFYHLVSDIETQIFKTVSLDLSFIRPFEANYEFLPRIHPAPWPDFFHCDDSPSEDSEAKEQKLNGLQQLWCLNSKMVSFALEPLIIEEVNVTLLGITAGNVCKIGPETLKSPETPTIGPEELRESEFAIEIQRHALDDRQASTLNLSLDIRWRRPDDDDGGPQSSSTTSTLPIPRFLLPLGEPRVLASATPSPTFPGFLHLDYTLENPSMHFLTFNLTMEASDQFAFHGPKSTTVQLVPLSRHTVRYNLLANVTGTWIQPQLVVVDSYFNKTLRVLPTEGMRGDKKGILVWVD | |||||||||||||||||||
1 | 2pn5A | 0.09 | 0.09 | 3.25 | 1.26 | SPARKS-K | ---------LLVVGPKFIRANQ-------EYTLVISNFNSQLS------KVDLLLKLE----------LSVLNVTKMVDVRRNMNRMINPEDLTAGNYKGQRGFSFHKEAELVYLSKSISGLIQVFKPGD----TVNFRVIVLDTESVYVTIRDPQSTAKLYAGVFESPTPMLGVWNGEELVSKTFEVKEVLSTFDVQVMPSVIPLEEHQAVNLTIEANYHFGKPVQGVAKVELYLDDDKLGQVELRFDNFAMDADQQDYTNRTVVKQSQITVYRYAYRVELPQFRPGLPFKCALQFTHHDKGISGKVEVQLSIHFNAVDGFFFYEDVNKVIKLELKILMRFMVTCTESKGNIIDAGFMRPNKQPKYLLQLNATEKMIPRAKILIATVAG--RTVVYDFADLAFQELRNNFDLSIDEQEIKPGRQIELSMSGRPGAYVGLAAYDGFHENEFDISLGLFARTLILFDSQESWLWKNVSRKLIEVVPDIQFTVQPFYIVENLPYSIKRGEAVVLQFTLFNNLGAEYIADVTLYNVAQTEFVGRPNKSVSVPPKVGVPISFLIKARKLG-----EMAVRVKALEKVIRVMPESLVQPRMDTRFFCFD | |||||||||||||
2 | 2pn5A | 0.10 | 0.09 | 3.33 | 1.50 | FFAS-3D | ----FNSQLSKVDLLLKLELSVLNVTKMVDVRINFNMPEDLTAGNYKIKEAELVYLSKSISGLIQVDKP-VFKPGDTVNFRVIVLDTELKPPARVK------------SVYVTIDPQRNVIRKWSTAKLYAG---VFESDLQIAPTVWNISVEVEGEELVSK----------------------TFEVKEVLSTFDVQVMPSVIPLEEHQAVNLTIEANYHFGKPVQGVAKVELYLDDDKLGQVELRFDNFAMDADQEQYTNRTVVKQSQITVYRYAYRVELIKFRPGLPFKCALQFTHHDGTKGISGKVEVETTTTSDNDGLIKLELQLSIHFNAVDGFFFYEDVNKVETVTDAYIKLELKSPIKRNKLMFMRPNKQPKYLLQLNATTVAGRTVVYDFADLAFQELRNNFDLSIDEQEIKPGRQIELSMSGRPGAYVGLAAYDKALLLGRSGSRKLIEVVSWYDPVYGLGIIKKPIQFTT---------VQPFYIVENLPYSIKRGEAVVLQFTLFNNLGAEYIADVTLYNVANQTEDLSYTKSVSVPPKVGVPISFLIKARKLGEMAV-RVKASIMLLEKVIRVMPESLVQPRMDTRFFCFD | |||||||||||||
3 | 2b39A | 0.11 | 0.10 | 3.73 | 0.77 | HHpred | --------LQSGYLFIQTDKTIYTPGSTVLYRVFTVDHKL---LPVG-QTVFITIETPDGIPVKRDSSNQFGILTLSWNIGVWKIKAY-----------YEDSPQQVFSAEFEVKEYVLPSFEVQLEPEEDDDLKVAFVIFGVQDGNGEAILKRQVLLNVQPSRADALVGKSISATVGVEAERTGIPIVTSPYQIHFT-K-T-PKFFPAMPFDLMVYVTNPDGSPAHIPVVTQGSTQDDGVAKLSINTQNKDPLTITVKKDNRTMYNTGNSNNYL---HLSRVELKPGETLNVNFHLR-TDPGAKI---RYYTYMIMNKGKLLKVGRVVLPLTITSDFIPSFRLVYTLIQREVVAWVDVKDTLVVKNGEKHHRP---GQQI--TLKIEADQGARVGLVAVDFVLNKKNKLIGCTPGSGRNYTDAGLTLKTGDAESWLWTVIDLKQ-------ADKNGTKLMNVFLKDSI-----TTWEILAVSLPEVT-VMQDFFIDLRLPYSVVRNEQVEIRAILYNYREAELKVRVELLYNPAFCSLATHQQTITIPARSSVAVPYVIVPLKIGLHEV-EVKAAVYFIKKTLKVVPEGVRVNKTAVRTL--- | |||||||||||||
4 | 4aq1A | 0.09 | 0.08 | 3.25 | 1.20 | MUSTER | ATLSRDKK----SVEVVVNKP-FTRNQEYTITATIKNLKGETAKE---LTGKFVWSVQDAVTVALNNSSLKVGEESGLTVKDVVGAKVELTSSNTNIVVVSSGEVSVSAAKVTAVKPGTADVTAKVTLPD-GVVLTNTFKVTVTEVNQGFTLVDNLSNAPQNVAMYDTKNGDPETKPVDFKDAIIATAAINGSELLVTANAGQSEVTFNTKRTFTVDVKKEPVDATSVKLSDEAVGGGEVEGKVSAVDQYGKEIKFGTKGKVTVTTNTEGLVIKNVNSDNTIDFDSGNSATDQFVVVATKDKIVNGKVEVKYFKN-ASDTTPTSTKTITVNVVNVKADATPVGLDIVA-----PSEIDVNAPNTASTADVDFINFESVEIYTLDNRLKKVTPTATTLVGTNDYVEVNGNVLQFKGNDELTLLTSSSTVN--VDVTADGITKRIPVKYINSASVPASATVAVTVKLNSSDNDLTFEELIFGVIDPTQLVKDEDINEFIAVSKAAKNDGYLYNKLVTVKDASGEVIPTGAGLNHDATNGNIWFDEEQAGLDVHFDVDFSLANVVKTGSGTVLSDAIQLTNSFTLVIKSIYVKGADKDDNNLLVSVN | |||||||||||||
5 | 4d93A | 0.07 | 0.05 | 2.17 | 2.72 | CNFpred | KMVDVR---RNMNRMINFNMPEEL--TAGNYKITIDGQR---GFSFH-KEAELVYLSKSISGLIQVDKPVFK--GDTVNFRVILLDTELKPPA------------RVKSVYVTIRDQRNVIRKWSTAKL---YAGVFESDLQIV-GVWNISVEVE----GEELV------------------SKTFEVKEYLSTFDVQVMPSVIPLEEHQAVNLTIEANYHFGKPVQGVAKVELYLD-DDKLNQKKELTV-------------------------------------YGKGQVELRFDNAMDADQQDVRVKVSFIEQY-TNRTVVKQSQITVYRY-AYRVELIKES--------PQFRPG------------------LPFKCALQFTHHDGTPAKGITGKVEVSDVGFETTTTSD---------------NDGLIKLELQPSE--------GTEQLGINFNAVD---------GFFFYEDVNKVETVT---DAYIKLELKSPIKRNKLMRFMVTCTERM---TFFVYYVMSKGNIIDAG-TKYLLQLNATMIPKAKILIATVAGRTVVYDYADLDFQELRNNFDLSIDEEIKP-GRQIELSMS | |||||||||||||
6 | 2b39A5 | 0.12 | 0.02 | 0.70 | 1.09 | HHsearch-2 | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QDFFIDLRLPYSVVRNEQVEIRAILYNYREANLKVRVELLYNPAFCSLATHQQTITIPARSSVAVPYVIVPLKIGLHEV-EVKAAVYFISGVKKTLKV-----VPEG------ | |||||||||||||
7 | 4aq1A | 0.08 | 0.08 | 3.16 | 2.30 | Neff-PPAS | TVTKATLSRDKKSVEVVVNKP---FTRNQEYTITATGIKNLKGETAKELTGKFVWSVQDAVTVALNNSSLKVGEESGLTVKDQDGKDVVGAKSNTNIVVVSSGEVSVSAAKVTAVKPGTADVTAKVTLPD-GVVLTNTFKVTVTEVNQGFTLVDNLSNATKTVAMYDTKNGDPETKPVDFKDATVRSLNPIIATAAINGSELLVTANAGQSGKASFEVTFKDNTKRTFTVDVKKEPVNQKTIKVSAVDQYGKEIKFGTKGKVTVTTNTEGLVIKNVNSDNTIDFDSGNSATDQFVVVATKDKIVNGKVEVKYFKN-ASDTTPTSTKTITVNVVNVKADATPVGLDIVAPSEIDVNAPNTASTA------------DVDFINFESVEIYTLDSNGNRLKKVTPTATTLVGVEVNGNVLQFKGNDELTLLTSSSTVNVDVTADGITKRIPVKYINSASVPASATVATSPNSSDNDDINEFIAVSKAAKNDYLYNKPLVTVKDASGEVIPTGANVYGLNHDATNGNIWFDEEQAGLAKKFSDVHFDVDFSLAVSSSPSLSDAIQLTNSGDAVSFTLVIKSIYVKGA----DKDDNNLLAAPVSVNVT | |||||||||||||
8 | 2b39A5 | 0.16 | 0.03 | 0.88 | 1.28 | HHsearch | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QDFFIDLRLPYSVVRNEQVEIRAILYNYREANLKVRVELLYNPAFCSLATHQQTITIPARSSVAVPYVIVPLKIGLHEV-EVKAAVYFIKKTLKVVPE-G------------- | |||||||||||||
9 | 4aq1A | 0.07 | 0.07 | 2.88 | 1.71 | PROSPECTOR2 | AVPEIVEVTAVNTVKVTFNTQATLSRDKKSVEVVVNKPFTRNQETITALTGKFVWSVQDAVTVALNNSSLKVGEESGLTVKDQDGKDVVGAKSNTNIVVVSSGEVSVSAAKVTAVKPGTADVTAKVTLPD-GVVLTNTFKVTVTEVNQGFTLVDNLSNAPQNKTVAMYDTKNGDPETKPVDFKDATVRSLNPIIATAAINGSELLVTAGQSGKASFEVTFKDNTKRTFTVDVKKEPVLQDATSVKLSDEAVGGGEVEGVNKFGTKGNTEGLVIKNVNSDNTIDFDSGNSATDQFVVVATKDKIVNGKVEVKYFKNASDTTPTSTKT-------------ITVNVVNVKADATPVGLDIVAPSEIDVNAPNTASTADVDFINFESVEIYTLDSNGNRLKKVTATTLVGTNDYVEVNGNVLQFKGNDELTLLTSSSTVNVDVTADG----------ITKRIPVKYINSASVPASATVATSPVTVKLNSVKDEDINEFIAVSKAAKNDGYLYNKPLVTVKDASGEVIPTGANLNHDATNGNIWFDEEQAGLFSDVHFDVDFSLAPSLSDAIQLTAVSFTLVIKSIYVKGADKDDNNLLAAPVSVNVS | |||||||||||||
10 | 2pn5A | 0.10 | 0.07 | 2.48 | 0.52 | SAM | ---------STFDVQVMPSVIPLEEHQAVNLTIEANYHFG---KPVQGV-AKVELYLDDDK----------------------------------------------LKLKKELTVYGKG-VELRFDNADQQDVPVKVSFVEQYTN-----------------------------------KQSQITVYRYAYRVELIKE--SPQFRPGLPFKCALQFTHHDGTPAGISGKVEVSDVR-------------TS-----------------NDGL---IKLELQPSEGTEQLSIHFNAV-----DGFYEDVNKVETVTDLKS-PIKRNKLMRFMVTCTERMTFFVYYVMSK---------------------------QPKYLLQLNATEKMIPRAKILIATVAGRTVVYD-FADLAF-FDLSIDEQEIKPGRQIELSMSGRP--GA--DKALLLFNKN----WKNVSIG----RSGSRKLIEVVPIQFTTVQPFYIVENLPYSIKRGEAVVLQFTLFNNLGAEYIADVTLYNVAQTEFVGSYTKSVSVPPKVGVPISFLIKARKLGEMAV---------------------------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |