>PF07854 (344 residues) AGLFIILFLVLILPFRVRKIEENLEPFFLIMGIVAVTVSGLWSLELIIEALETPVRITEV MGIPVGIFQVVLIVGLIIHYYNKQVYSFLVAVLKKLGIKVFAFLVVTVFGLASSIISVIV SAVILAEIALVMPLERKSKVEFVVIACFAVGFGAALTPVGEPLSTIVVKKLNEDFFYLIE LVGEYIIPSVIILGIYAAMRVGGVSVKEIEIPEYTETLRTVVIRAVRVYVFIAALVLLGE GFTPIIYWYISKIPPEIIYWVNMVSAILDNATLAAAEIGPQLTELQIKGALMGLIISGGM LIPGNIPNIVVAGRLRITMGEWARIGVPLGLIMMTIFFVIIYVL |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | AGLFIILFLVLILPFRVRKIEENLEPFFLIMGIVAVTVSGLWSLELIIEALETPVRITEVMGIPVGIFQVVLIVGLIIHYYNKQVYSFLVAVLKKLGIKVFAFLVVTVFGLASSIISVIVSAVILAEIALVMPLERKSKVEFVVIACFAVGFGAALTPVGEPLSTIVVKKLNEDFFYLIELVGEYIIPSVIILGIYAAMRVGGVSVKEIEIPEYTETLRTVVIRAVRVYVFIAALVLLGEGFTPIIYWYISKIPPEIIYWVNMVSAILDNATLAAAEIGPQLTELQIKGALMGLIISGGMLIPGNIPNIVVAGRLRITMGEWARIGVPLGLIMMTIFFVIIYVL | |||||||||||||||||||
1 | 4f35D | 0.16 | 0.15 | 4.85 | 1.43 | SPARKS-K | LIVLADVALFLALYHFLPFEHNVVLGISLA-FIAVLWLTEALH---VTVTAILVPVAVALNNFANSIIFLFLGGFALAAALDKVIADKVLAAQGKSVAVFLFGVTALLS-----WISNTATAALP----LVLGVLSKVDVFVLLGVAYSASIGGIATLVGSPPNAIAAAEVGLSFAILYKVVTLGIFGLTVFLWIFSSPINAALGGFK-------SFDTLVALGAIGVLLLFGGGLCLSNVLKQTSVFLANALIFVVILVVATFVVFASNTASAALLIPVFAPVLLSVLIAVAASCAF--LPVATPPNAIVFASGHIKQSE--RVGLYLNIACIGLLTAIALFW | |||||||||||||
2 | 4f35D | 0.14 | 0.13 | 4.49 | 1.68 | FFAS-3D | --LIVLADVALFLALYHNVVLGISLAFIAVLTVTAILVPGIFETQAALNNFANSI---------IFLFLGGFALAAAHHQGLDKVIADKVLAAQGKSVAVFLFGVTALLSWISNTATAALPLVLGVLSKVDADKQRSTYVFVLLGVAYSASIGGIATLVGSPPNAIAAAEVGLSTLGIFGLTVFLWIFSSPINTLVALGAILLSFARVVHWKEIQKTADWGVLLLFGGGLCLSNVLKQTGTSVFLANALSDVSHGIFVVILVVATEFASNTASAALTVAEAFGSPVLLSVLIAVAASCAFLPVATPPNAIVFASGHIKQSERVGLYLNIACIGLLTAIALFW-- | |||||||||||||
3 | 4r0cA | 0.11 | 0.10 | 3.59 | 1.16 | HHpred | -LFVWFCLLLLPLTAVLVTAPETIHSDADGLRYL---------FTTLVGNFTFAP-LGVVLVAM--LGLGVAEQSGLLSVSLASL----VRRSSG---GA-LVFTVAFAGVLSSLTV-DAGYVVLIPLAGLVFQLAGRPPIAGIATAFAASGGFSANLLVGPVDATLSTAAHIDATNYWFIIAS----TFLVTGLVTLITRTLTEPRANTVASDPQIHSRAMKWTLAILLAGLCGAVSGRNSGAVITVKGGALPKVLFVVLALINLMISASAKWSILAIPMLSEASQAAYRVGDSSTNIITPLMP-YFVLVLGFAETGIGTLIALMLPYSLTLLLGWSVLLGVW | |||||||||||||
4 | 4f35D | 0.13 | 0.12 | 4.24 | 1.20 | MUSTER | NVVLGISLAFIAVLWLTEAL-----VTVTAILVPVAVFFGIFETQAALNNFANSIIFLFLGGFALAAAHHQ---------LDKVIADKVLAAQGKSVA-VFLFGVTALLSWIS--NTATAALPLVLGVLSKVDKQRSTYVFVLLGVAYSASIGGIATLVGSPPNAIAAAEVGLSAIAILYFLGKVVTLGIFGLTVFLWIFSSPINAALGGFKSFVVHWKEIQKTAWGVLLLFGGGLCLSNGTSVFLANALSDVSILVVATFVVFTEFASNTASAALLIPVFATVLLSVLIAVAASCAF--LPVATPPNAIVFASGHIKQSE--RVGLYLNIACIGLLTAIALFW | |||||||||||||
5 | 5uldA | 0.13 | 0.12 | 4.34 | 1.67 | CNFpred | VVLGISMLAFIAVLWLTEAL---HVTVTAILVPVMAVFFGIFETQAALNNF--ANSIIFLFLGGFALAAAMHHQGLDKVIADKVLAMAQ------GKMSVAVFMLFGVTALLSMWISNTATAAMMLPLVLGVL-QRSTYVFVLLGVAYSASIGGIATLVGTGPNAIAAAEVGLSFTDWMKFGLPTAMMMLPMAIAILYFLLKPTLNGMFELDRAPVTADWGILLLFGGGLCLSNVLKQTGTSVFLANALSD-VILVVATFVVFLTEFTSNVATTTLLIPVFATPVLLSVLIAVAASCAFMLPVATPPNAIVFASGHIKQSEMMRVGLYLNIACIGLLTAIAMLF | |||||||||||||
6 | 4f35D | 0.18 | 0.16 | 5.22 | 3.26 | HHsearch-2 | VLADVALFLALYAFIAVLWLTEALHVTVAILVPV-AVFFGIFETQAALNNFANSI-IFLFLGGF--ALAAA-HHQGLDKVIADKV----LAAQGKS--VAV-F-LFGVTALLS-WISNTATAA--LPLVLGVLSKVDADKRVLLGVAYSASIGGIATLVGSPPNAIAAAEVGLSFTDWKFGLPTAL---PA-----IAILYFL-LVNWDK-GK----VVTLGIFGLTVFLALGAILLARVHWKEIQKVFLSDVSILVVATFVFLTEFASNTASAALLI-PVFPVLLSVLIAVAASCAF--LPVATPPNAIVFASGHIKQSE--RVGLYLNIACIGLLTAIALFW | |||||||||||||
7 | 4f35D | 0.14 | 0.13 | 4.39 | 1.38 | Neff-PPAS | NVVLGISLAFIAVLWLTEA----LHVTVTAILVPVAVFFGIFETQAALNNFAN-----------SIIFLFLGGFALAAAHHQGLDKVIADKVLAAQGKSVAVFLFGVTALLSWISNTATAALPLVLGVLSKVDADKQTYVFVLLGVAYSASIGGIATLVGSPPNAIAAAEVGLSFTDWK-----FGLPTALPAIAILYFLLVNWDKGKVVVVHWKEIQKTADWGVLLLFGGGLCLSNVLKGTSVFLANALSDVSLVVATFVVFLTEFASNTASAALLIPEAFGSPVLLSVLIAVAASCAFLPVATPPNAIVFASGHIKQSE--RVGLYLNIACIGLLTAIALFW | |||||||||||||
8 | 4f35D | 0.18 | 0.16 | 5.29 | 4.14 | HHsearch | VLADVALFLALLAFIAVLWLTEALHVTVAILVPV-AVFFGIFETQAALNNFANSI-IFLFLGGF--ALAAA-HHQGLDKVIADKV----LAAQGKS---VAVF-LFGVTALLS-WISNTATAA--LPLVLGVLSKVDADKRVLLGVAYSASIGGIATLVGSPPNAIAAAEVGLSFTDWKFGLPTAL---P----A-IAILYFLL-VNWDK-GK----VVTLGIFGLTVFLWLGAILLARVHWKEIQKVFLSDVSFLVVATFVFLTEFASNTASAALLI-PVFPVLLSVLIAVAASCAF--LPVATPPNAIVFASGHIKQSE--RVGLYLNIACIGLLTAIALF- | |||||||||||||
9 | 4r0cA | 0.12 | 0.12 | 4.20 | 1.42 | PROSPECTOR2 | RPTLLFVWFCLLLLPLTAVLGALDVTATHPLTDETITAHSLLDADGLRYLFTTLVGNFTGFAPLGVVLVAMLGLGVAEQSLLSVSLASLVRRSSGGA----LVFTVAFAGVLSSLTVDAGYVVLIPLAGLVFQLAGRPPIAGIATAFAAVSGGFSANLLVGPVDATLAGLSPDRTVAATGNYWFIIASTFLVTGLVTLITRTLTEPRLAHANTVADASIHGLVVIVALIAGICGAVYGFRNSGAVITAMEVTVPKVVLLLLFVVLTALSASAKWSILALGISPEASQAAYRVGDSSTNIITPLMP-YFVLVLGFAETGIGTLIALMLPYSLTLLLGWSVLLGVP | |||||||||||||
10 | 4f35D | 0.18 | 0.13 | 4.35 | 1.14 | SAM | ---------------------EALHVTVAILVPV-AVFFGIFETQAALNNFANSIIFLFLGGFA--LAAA--HHQGLDKVIADKV----LAAQGKS---VAVF-LFGVTALLS-WISNTATAA--LPLVLGVSKVDADKQRVLLGVAYSASIGGIATLVGSPPNAIAAAEVGLSFTDW-KFGLPTAL--PA-IAILYFL---------------------LGIFGLTVFLWIFSSP-----------NA-----IFVVATFVFLTEFASNTASAALLI-PV-PVLLSVLIAVAASCAF--LPVATPPNAIVFASGHIKQSE--RVGLYLNIACIGLLTAI---- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |