Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220
| | | | | | | | | | | |
| Seq | VPAGATIVSSKFVWKTKRNALGEITGHKARLVAQGNRQRDGIDFTETFAPVAHFSSIRSLLALAATNGLHVHQADIDKAYLHGDLDHDIWMTAPRGFDLPGDKVLRLQRSIYGLKQAGRIWNRHIDASLRDLGYTATGTDHCVYSRLDDRQRPHYIALYVDDLLMISPDLAEIERVISGLEQRYGVKRLGPAEYILGIQIRRLDDGSITLSQERYIMDVLARFHFDTTTRGTTVPM |
1 | 5ovnA | 0.17 | 0.14 | 4.75 | 1.20 | HHsearch-2 | | KRAPNNPWNTPVFAIKKK--SG-----KWRMLID-FRELNKLTEKGAQLGLPHPAG--------LQIKKQVTVLDIGDAYFTIPLDPDTAFTLPRKNNAGPGRRFVWCSLPQGWILSPLIYQSTLDNIIQPFIR------------QN---PQLDIYQYMDDIYIGSNSKKHKEKVEELLLWWFETPQEEPPYTWMGYELHPL--T-WTIQQKNWASQAIPDLSMMRGNQNLNSTR |
2 | 3ig1B1 | 0.17 | 0.12 | 4.03 | 1.69 | HHsearch | | SKIPENPYNTPVFAIKKKD-ST-----KWRKLVDFRNKRT-QDFELGI-PHP----------AGLKKKKSVTVLDVGDAYFSVPLDEDAFTI-PSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFKKQ-------------N--PDIVIYQYMDDLYVGSDEGQHRTKIEELRQHLLRW---GPPFLWMGYELHPD--K-WT--------------------------- |
3 | 1rw3A1 | 0.19 | 0.15 | 4.94 | 1.10 | SP3 | | LAVRQAP------LIIPLKATSTPVSIKQYLLDQGIKPGTNQDLDIHP-TVPNPYNLLSGLP---PSHQWYTVLDLKDAFFCLRLHPT---SQPRDPEMGISGQLTWTRLPQGFKNSPTLFDEALHRDLADF---------------RIQHPDLILLQYVDDLLLAATSQQGTRALLQTLGNLYRASACQKQVKYLGYLLK---EGQRWLTEAR-----------KETVMGQPTPK |
4 | 5cqcA1 | 0.13 | 0.10 | 3.53 | 0.62 | SPARKS-K | | ---------------------------------SIYPPETSWEVNK----GMNSSRLHKLYSLFFDKSSAFYLGDDVSAYFQSKNDQQIFLFRP-----DSDYVAGYHVDAGWVNDKLDRRLSEISEFCSKATQPATFILPFVEMPTKGVQHQVLLTISYDPTVYDSTCDEILTQSIEKAIKSTDFT-LGKFT-----RAAYNTEG----NCGSYTFRTIKEVISSSAQGTTSNSY |
5 | 1rw3A1 | 0.15 | 0.13 | 4.26 | 0.70 | FFAS-3D | | ------------LLPVKKPGTNDY-----RPVQ-DLREVNKRVEDIHP-TVPNPYNLL---SGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFARDPEMGISGQLTWTRLPQGFKNSPTLFDEALHRDLADF---------------RIQHPDLILLQYVDDLLLAATSELDCQQGTRALLQTLKAQICQKQVKYLGYLL---KEGQRWLTEARTPRQLREFLGTAGFCRLMAAPL |
6 | 1rw3A | 0.16 | 0.13 | 4.39 | 0.66 | HHpred | | ---GIVPCQSPWLPVKKPGTN------DYRPVQD-LREVNKRV-EDIHPTVPNPYNLLSGLP---PSHQWYTVLDLKDAFFCLRLHPTAFEWRDPEM--GISGQLTWTRLPQGFKNSPTLFDEALHRDLADFRQH-------------PD---LILLQYVDDLLLAATSELDTRALLQTLGNGYRASAKQKQVKYLGYLLKE---GQRWLTEAKTPRQLREFLGTAGF-CRLWIP- |
7 | 6ar1A | 0.19 | 0.16 | 5.22 | 0.64 | MUSTER | | RPA-----PVRRVEIPK--PGGGIPTVVDRLIQQAILQETPI-FDPDFSSSSFHDAVRQAQGYIQEGYRYVVDMDLEKFFVARKVKDKRVLKL-QAGVMIEGVKVQTEEGT-GGPLSPLLANILLDDLDKEL-----------------EKRGLKFCRYADDCNIYVKSQRVKQSIQRFLEKTLKLKRPWKRA-FLGFSFTPERKARIRLA-PRSIQRLKQRIRQ--TNPNWSISM |
8 | 4mh8A | 0.17 | 0.11 | 3.47 | 0.93 | CNFpred | | --------------------------------------------------------PYNLLSGLPPSHQWYTVLDLKDAFFCLRLH-FAFEWRDPEMG--ISGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQH---------------PDLILLQYVDDLLLAATSELDCQQGTRALLQTLGAQICQKQVKYLGYLLKE---GQRWLTE-ARKETVMGQ-------------- |
9 | 3ig1B1 | 0.18 | 0.13 | 4.15 | 1.20 | HHsearch-2 | | SKIPENPYNTPVFAIKKKDS-T-----KWRKLVDFRNKRT-QDFWELGIPHP----------AGLKKKKSVTVLDVGDAYFSVPLDEDAFTI-PSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFKKQ-------------N--PDIVIYQYMDDLYVGSDEGQHRTKIEELRQHLLRW---GPPFLWMGYELHPDK---WT--------------------------- |
10 | 6ar1A3 | 0.16 | 0.12 | 3.94 | 0.64 | Neff-PPAS | | -------------------------------------------FDPDFSSSSFHDAVRQAQGYIQEGYRYVVDMDLEKFFDRVNHDILMSRVARQAGVMIEGVKVQTEEGTPGGPLSPLLANILLDDLDKELEKRG-----------------LKFCRYADDCNIYVKSLRAGQRVKQSIQRFLEVDRPWKRA-FLGFSFTPERKARIRLA-PRSIQRLKQRIRQLTNPNWSISMP |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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