Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100
| | | | | |
| Seq | GTVTDKNTGLMWGNDSVVTGTWESALASCEASGANGYDDWRLPSAAELLSIVDYGRKDPAVDDTVFTNTVSEFYWAATLIFDGSDRAWIVNFLNGWASASTYPRNLVESDTHYMRLVR |
1 | 5n40A3 | 0.15 | 0.12 | 4.00 | 1.70 | SPARKS-K | | TIGTNVENNETWAMFN-----QSQAVAMC-----------TVPSSSQLVSLYNLYPL-NQIQTV-AGWPTMQVYRSSTSAVIG--QHFYVYMNTG----NYAYNSIGNGGNYNVSCSL |
2 | 5n40A3 | 0.17 | 0.14 | 4.45 | 0.79 | FFAS-3D | | GTNVEN--NETWAM-----FNQSQAVAM-----------CTVPSSSQLVSLYNLYPLNQ--IQTVAGWPTMQVYRSSTSA--VIGQHFYVYMNTGNYAYNS-IGNGDVDGNYNVSC-- |
3 | 5n40A3 | 0.14 | 0.11 | 3.76 | 1.16 | HHpred | | TIGTNVENNETWAM-----FNQSQAVAMC-----------TVPSSSQLVSLYNLYPLN-QIQTVAWPTM--QVYRSSTSAVI--GQHFYVYMNTGNYAYNS----IGNGGNYNVSCSL |
4 | 5n40A3 | 0.15 | 0.13 | 4.25 | 1.98 | MUSTER | | TIGTNVENNETWAM-----FNQSQAVAMC-----------TVPSSSQLVSLYNLYPLNQIQTVAGWPT--MQVYRSSTSAVIG--QHFYVYMNTGNYAYNSIGNGDV-DGNYNVSCSL |
5 | 1f00I | 0.17 | 0.14 | 4.76 | 0.97 | CNFpred | | ATYTIATPNSLIVPNMSKRVTYNDAVNTCKNFG------GKLPSSNELENVFKAWGAANK---EYYKSSQTIISWVQQTAQDKSGVASTYDLVKQNPLNNIKA------SNAYATCVK |
6 | 5n40A3 | 0.14 | 0.11 | 3.76 | 2.62 | HHsearch-2 | | TIGTNVENNETWAM-----FNQSQAVAMC-----------TVPSSSQLVSLYNLYPLN-QIQTVGWPT--MQVYRSSTSAVI--GQHFYVYMNTGNYAYNS----IGNDGNYNVSCSL |
7 | 5n40A3 | 0.13 | 0.11 | 3.80 | 2.24 | Neff-PPAS | | TIGTNVENNETWAM-----FNQSQAVAMC-----------TVPSSSQLVSLYNLYPLNQIQTVAGWPT--MQVYRSSTSAVI--GQHFYVYMNTGNYAYNSIGN-GDVDGNYNVSCSL |
8 | 5n40A3 | 0.14 | 0.11 | 3.75 | 2.87 | HHsearch | | TIGTNVENNETWAM-----FNQSQAVAMC-----------TVPSSSQLVSLYNLYPLN-QIQTVGWPT--MQVYRSSTSAVI--GQHFYVYMNTGNYAYNS----IGNDGNYNVSCS- |
9 | 5n40A3 | 0.14 | 0.12 | 4.03 | 0.96 | PROSPECTOR2 | | TIGTNVENNETWAM-----FNQSQAVAMC-----------TVPSSSQLVSLYNLYPLNQIQTVAGWPT--MQVYRSSTSAVIG--QHFYVYMNTGNYAYNSIGNGD-VDGNYNVSCSL |
10 | 5n40A3 | 0.15 | 0.11 | 3.71 | 0.81 | SAM | | ---TNVENNETWAM-----FNQSQAVAMC-----------TVPSSSQLVSLYNLYPLN-QIQVAGWPTM--QVYRSSTSAVI--GQHFYVYMNTGNYAS------IGND-NYNVSCSL |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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