Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80
| | | | |
| Seq | MSGMSHGGAPKAARPTPTAVSASSGYDIADADRSSSSHFHHTSQLSDDFSLGSPLSPPDSAHVQDGLLQDSLFPEWRNAAPRDGVESPDE |
1 | 3bogA | 0.12 | 0.11 | 3.89 | 1.22 | SPARKS-K | | CKGADGAHGVGC--PGTAGAAGSVGGP--GCDGGHGGNGGNGNPGCAGGVGGAGGASGGTGVGGRGGKGGS-----GTPKGADGAPGAP- |
2 | 1mliA | 0.16 | 0.16 | 5.16 | 1.23 | Neff-PPAS | | ---KMTVKLPVDMDPAKATQLKADEKELAQ-RLQREGTWRHLWRIAGHYANYSVFDVPSVEALHDTLMQLPLFPYMDICRHPSSIHSDDR |
3 | 3boiA | 0.14 | 0.12 | 4.17 | 1.10 | SPARKS-K | | ADG-AHGVNGCPGTAGAAGSVGGPGC-----DGGHGGNGGNGNPGCAGGVGGAGGASGGTGVGGRGGKGGSGTPKGADGAPGAP------ |
4 | 3tb8A | 0.24 | 0.23 | 7.28 | 0.44 | FFAS-3D | | WSKSSVIGWPAVRERMRRAEPAADGVGAASRDLEKHGAITSSNEAQEEEKVGFPVTPQVPLRPMEGLIHSQYFPDWQNYTPGPGIRYP-- |
5 | 3tb8A | 0.27 | 0.26 | 7.84 | 0.31 | HHpred | | ---SSVIGWPERMRRAEPAADG-VGAASRDLEKHGSSNTAACAQEEEKVGFPVPLRPMTYKAAVDGLIHQGYFPDWQNYTPGPGIRYPL- |
6 | 1mliA | 0.16 | 0.16 | 5.14 | 0.98 | MUSTER | | M--KMTVKLPVDMDPAKATQLKADEKELAQRLQREG-TWRHLWRIAGHYANYSVFDVPSVEALHDTLMQLPLFPYMD--CRHPSSIHSDD |
7 | 3kx6A | 0.19 | 0.04 | 1.43 | 0.69 | CNFpred | | -------------------------------------------------------------------LQSSVLKTWNGSM--SNAAAAQD |
8 | 4g07A1 | 0.24 | 0.09 | 2.77 | 0.42 | HHsearch-2 | | VGGSN------HVLPTARSARFSSGLSVLDYMKRTSLLK--------------------------------------------------- |
9 | 3c6rD | 0.09 | 0.08 | 2.97 | 1.20 | Neff-PPAS | | --HLTTRNGEPHMIVSRQEKGKSLLFKTEDGVNMCTLMAMDLGELCEDTTYKCPLRQNEPEDIDCWCNSTSTWVTYGTCT---------- |
10 | 1foaA2 | 0.10 | 0.07 | 2.50 | 0.46 | HHsearch | | LSYLQQEDFLARVY----GA---PQLQVEKVR------------------TNDR-KELGEVRVQGSFKALGVMDDLKSGVPRAGYRGIV- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|