Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160
| | | | | | | | |
| Seq | GRIVLREKAKLSVNSLSQTGGSLYMEAGSTLDFVTPQPPQQPPAANQLITLSNLHLSLSSLLANNAVTNPPTNPPAQDSHPAIIGSTTAGSVTISGPIFFEDLDDTAYDRYDWLGSNQKIDVLKLQLGTQPSANAPSDLTLGNEMPKYGYQGSWKLAWDPNTANNGPYTLKATWT |
1 | 6n2bA | 0.13 | 0.13 | 4.53 | 0.80 | SPARKS-K | | GRTTIKSGATLYCDQLEVRNNGVFIEAGATLVTRAISISGGTIEGPGTRQVNPYPPFIDDIKNFDFDSRMSVTTLPADPVGAYDKSATPWEIVVYGESGINDSELITEVNSKLGSFPSNVRLYLASKG-NITFSNPTSLPLYNPTTGK-LVIEGAIITLGSTNISGAG-IELIYK |
2 | 5m30B1 | 0.12 | 0.09 | 3.01 | 0.53 | FFAS-3D | | GVVAAEDDSLLPLSRLNATRLIVRFPDGTLIDTERADNLPPVCSDRSLVDIV-LALP-------LLNANGGNLDNGSESERPRRWKSERAVLRHNLTLRMAHQENAAWL---------TCPVTRLVRDAQGQWCRDPR------------------------------------- |
3 | 6n2bA | 0.17 | 0.13 | 4.15 | 0.37 | HHpred | | GRTTIKSGATLYCDQLEVRNNGVFIEAGATLVTRAISISGGTIEGPGT-------RQVNPSAT--FPSYPPFITLPADPGATTLKSATPWEIVVYGESGI-NDSELITEVNKLGSFPSNVR-LYLASKGNITFSNPTSLPLYNP------------------------------- |
4 | 1wxrA | 0.13 | 0.12 | 4.19 | 0.84 | MUSTER | | GTVNLDNQSVLNINIFNGGNSTVNISDSAVLGNSTLTSTALNLNKGANALASQ-SFVSDGPVNISDATLSLNSRPDEVSHTLLPVYDYAGSWNLKGDARLNVGPYSMLSGNINVQDKGTVTL-----GEGELSPDLTLQNQMLYSLFNGYRNIWSGSLN---APDATVSMTTQWS |
5 | 3ljyA | 0.14 | 0.10 | 3.30 | 1.16 | CNFpred | | AAAKVSGNANFMVNPLTGDETVIKANANSLVQLKE------------TVTVGKLDLNVSGS--------ANMVVN-------HLEAD-KIECDIDGSGSITIK-------------KGNAKEGDYSIVSSGDIHA-----------FGLAVPQLSCKVTG----NGLAEVHATDN |
6 | 6n2bA1 | 0.22 | 0.09 | 2.71 | 0.72 | HHsearch-2 | | GRTTIKSGATLYCDQLEVRNNGVFIEAGATLVTRAISI--------SGGTIEGPTRQVNPSATF--PSYPPF-----------I-----------------DDIKNF-------------------------------------------------------------------- |
7 | 3j8dA1 | 0.09 | 0.09 | 3.26 | 0.82 | Neff-PPAS | | -SCRASESVDSFIYWYQQKPGQPPKLLIYLASNLESGVPASGSETDFTLTIDSVETDQNNEDPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPK---------DINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYKTSTSPIVKSFN |
8 | 6n2bA1 | 0.17 | 0.07 | 2.25 | 0.82 | HHsearch | | GRTTIKSGATLYCDQLEVRNNGVFIEAGATLVTRAISISGGTIEGPGT-------RQVNPSATF--PSYPPFIDD---------IKN-------------------F-------------------------------------------------------------------- |
9 | 5n8pA | 0.07 | 0.07 | 2.81 | 0.68 | SP3 | | QTVTAGAGQNLTATTAAQAANNVAVDGGANVTVASTGVTSGTTTVGANSAASG-TVSVSVANSSTTTTGAIAVTGGTAVTVAQTAGNAVNTTLTQADVTVTGNSSTTAVTVTQTAAATAGATVAGRVNGAVTITDSAAASATTAGKIA------TVTLGSFGASSALTTVNLSGT |
10 | 3ucpA2 | 0.12 | 0.11 | 4.00 | 0.76 | PROSPECTOR2 | | LALRTEYAYKLENGTFDVAKGELTF----TVNWHSDVAPHQDPK------VKEFWVSLTAFNGTEYTMGPRPSNGTLGRSENRIPNGSKVTYTLTGIKAVIGTSSVPYKQIVSIGKGFMDGKLLICANSAELDPTMDAAIDCSNTEAPIYEVIVKASFSADASNVTARS-----I |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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