>PF07454 (263 residues) NPMSLLEKEIPVFSQSSSKDLAYNKQEAPCDSFKLEDKEISKYDKEVKDNLNMPNKVVNV QEPKLKKKLDPKKPEVFIYHTHTTESYRPGEPTNFDTDKNVCAVGDELAKELSNNYGINT LHDKTVHDAQAYTQSYARSSVTLDKYLKQYGDFKLVIDLHRDSVDNKKAVTIKMNGENVA KFMMVMARKNPHFNKNMQMANNIMKNSDRLFPGFCKGVFYYNYGTRYFNQNKSNNALLIE VGADCNTTLEAKGSAKYLARIIA |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 | | | | | | | | | | | | | | |||||||||||||
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Seq | NPMSLLEKEIPVFSQSSSKDLAYNKQEAPCDSFKLEDKEISKYDKEVKDNLNMPNKVVNVQEPKLKKKLDPKKPEVFIYHTHTTESYRPGEPTNFDTDKNVCAVGDELAKELSNNYGINTLHDKTVHDAQAYTQSYARSSVTLDKYLKQYGDFKLVIDLHRDSVDNKKAVTIKMNGENVAKFMMVMARKNPHFNKNMQMANNIMKNSDRLFPGFCKGVFYYNYGTRYFNQNKSNNALLIEVGADCNTTLEAKGSAKYLARIIA | |||||||||||||||||||
1 | 4rn7A | 0.16 | 0.10 | 3.40 | 1.22 | HHsearch-2 | ----------------------------------------------------------------------SNAYTVFIDPGHGGND--KGTESNRYEKDLNLQIAKKLANKLSQ-KDIQVVVSRTDDTYISL---KDR-----AILANN-SSADVLVSIHLNAEKNNT-----ATGIE----TWYRNKA---TDGSKELAQTVQSTIVSYVKVRDRGIVENNF--EVLRES-N-PAILIECGFLTTPSEEQKILAEGIVQGVL | |||||||||||||
2 | 5j72A3 | 0.15 | 0.10 | 3.45 | 1.23 | Neff-PPAS | ---------------------------------------------------------------EPDNSGSAAGKTVVIDPGHGGSDSTSGLNGGAQEKKYTLNTALATTEYLRSK-GINVVMTRDTDKTMALGERTALSNTIK---------PDLFTSIHYNASNGS-----------GNGVEIYYKVKDKNGGTTKTAASNILKRILEKFNMKNRGIKTRTLDNGKDYRNNNYPAILVECAFIDNKSDMDKLNTAEKVKTMG | |||||||||||||
3 | 4rn7A | 0.16 | 0.10 | 3.40 | 1.56 | HHsearch | ----------------------------------------------------------------------SNAYTVFIDPGHGGND--KGTESSNRYEKDNLQIAKKLANKLSQ-KDIQVVVSRTDDTYISL---KDRA-----ILANN-SSADVLVSIHLNAEKNNT-----ATGIE----TWYRNKA---TDGSKELAQTVQSTIVSYVKVRDRGIVENN--FEVLRES-N-PAILIECGFLTTPSEEQKQLAEGIVQGV- | |||||||||||||
4 | 4rn7A | 0.17 | 0.10 | 3.37 | 0.99 | SPARKS-K | ----------------------------------------------------------------------SNAYTVFIDPGHG-----GNDKGTESKTSNNLQIAKKLANKLSKQKDIQVVVSRTDDTYISLKDRAILANNS---------SADVLVSIHLNAEKNGNTAT---------GIETWYRNKATDG--SKELAQTVQSTIVSYVKVRDRGIVENN---------FSNPAILIECGFLTT-PSEEQKIAEGIVQGVL | |||||||||||||
5 | 4rn7A | 0.17 | 0.11 | 3.51 | 0.94 | FFAS-3D | ----------------------------------------------------------------------SNAYTVFIDPGHGGNDKGTESKTSNRYEKDLLQIAKKLANKLSKQKDIQVVVSRTDDTYISLKDRAILANN---------SSADVLVSIHLNAEKNGNTATGIE---------TWYRNKATD--GSKELAQTVQSTIVSYVKVRDRGIVENNF----EVLRESNPAILIECGFLTTPSEEQDQLAEGIVQGV- | |||||||||||||
6 | 4binA | 0.11 | 0.08 | 2.75 | 0.65 | HHpred | -----------------------------------------------------------NSGPQPGKAGRDRPIVIMLDPGHGGEDSGAVGKYKTREKDVVLQIARRLRSLIEK-ENMKVYMTRNEDIF---IPLQVRVAKA-----QK-QRADLFVSIHADAFTSRQ-----PSGS----SVFALSTKGATIADSLKFGKAVLNKLGKINKLHKNQVEQAG---FAVLKAPDIPSILVETAFISNVEEERKLVAESILAGIK | |||||||||||||
7 | 5j72A | 0.17 | 0.14 | 4.63 | 0.80 | MUSTER | PKTYVSAYHSTNLSEKTAETVYQ----------GMKDSVINSIASSLSKHN---------APTEPDNSGSAAGKTVVIDPGHGGSDSGATSGLNGGEKKYTLNTALATTEYLRSK-GINVVMTRDTDKTMALGERTALSNTI----------PDLFTSIHYNASNGSG------NG-----VEIYYKVKDKNGGTTKTAASNILKRILEKF-NMKRGIKTLDNGKDYLNNNY--PAILVECAFIDNTAEKVKTMGTQIGIGIE | |||||||||||||
8 | 4rn7A | 0.13 | 0.08 | 2.89 | 0.84 | CNFpred | ------------------------------------------------------------------------AYTVFIDPGHGGNDKGTESKTSNRYEDLNLQIAKKLANKLSKQKDIQVVVSR----TDDTYISLKDRAILANNS-----SADVLVSIHLNAEKNG---------NTATGIETWYRN--KATDGSKELAQTVQSTIVSYVKVRDRGIVENN---FEVLRESNMPAILIECGFLT-NEKYQDQLAEGIVQGVL | |||||||||||||
9 | 5j72A3 | 0.16 | 0.11 | 3.65 | 1.15 | HHsearch-2 | ---------------------------------------------------------------EPDNSGSAAGKTVVIDPGHGGSD--SGATSGGAQEKKTLNTALATTEYLRS-KGINVVMTRDTDKTMAL---GER----TALS-NTI-KPDLFTSIHYNASNG-SG-----NGVE-----IYYKVKDKNGGTTKTAASNILKRILEKFNMKNRGIKTRTLKDYLVLRNNNYPAILVECAFIDNKSDMDKTMGTQIGIGIE | |||||||||||||
10 | 4rn7A | 0.17 | 0.11 | 3.51 | 1.20 | Neff-PPAS | -----------------------------------------------------------------------NAYTVFIDPGHGGNDKTESKTSNRYEKDLNLQIAKKLANKLSKQKDIQVVVSRTDDTYISLKDRAILANNSS---------ADVLVSIHLNAEK---------NGNTATGIETWYRNKAT--DGSKELAQTVQSTIVSYVKVRDRGIVENNF----EVLRESNPAILIECGFLTTPSEEQKIINEKYQDQLA | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |