>PF07433 (307 residues) ALPGRGHGVARHPSGEEFVLVGRRPARFAAIVRRQADGEPSYEELSSAEDRHFFGHACYS RDGRYLYTTENDYASGRGVIGVRDAQDGYRQVGEWSSGGIGPHELHLSADGKALVVANGG ILTHPDNPREKMNPDAMEPSLAYIDIASGALLERWELEDKKLSIRHLDVADDGAVCFGCQ YEGPPTDTPPLVYMHKSGSPIQAASAEYSLWRSLKNYTGSVVINSRLRVAGVTSPRGDSI TLWSLDAQKCVGKISLPDVCGLSLTPDGKEFLASSGEGKVIRVDPLTMKVEQHWSVAGTR WDNHMTL |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 | | | | | | | | | | | | | | | | |||||||||||||
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Seq | ALPGRGHGVARHPSGEEFVLVGRRPARFAAIVRRQADGEPSYEELSSAEDRHFFGHACYSRDGRYLYTTENDYASGRGVIGVRDAQDGYRQVGEWSSGGIGPHELHLSADGKALVVANGGILTHPDNPREKMNPDAMEPSLAYIDIASGALLERWELEDKKLSIRHLDVADDGAVCFGCQYEGPPTDTPPLVYMHKSGSPIQAASAEYSLWRSLKNYTGSVVINSRLRVAGVTSPRGDSITLWSLDAQKCVGKISLPDVCGLSLTPDGKEFLASSGEGKVIRVDPLTMKVEQHWSVAGTRWDNHMTL | |||||||||||||||||||
1 | 3mkqA1 | 0.11 | 0.09 | 3.32 | 1.65 | SPARKS-K | NRSDRVKGIDFHPTEPWVLTTLY--SGRVEIWNY-ETQV-EVRSIQVTETPV--RAGKFIARKNWIIVGSD-----DFRIRVFNYNT-GEKVVDFEAHPDYIRSIAVHPTKPYVLSGSD------------------DLTVKLWNWENNWA-LEQTFEGHEHFVMCVAFNPKPSTFASGCLDR-----TVKVWSLGQSTPNFTLTT------GQERGVNYVDYYPDKPYMITASD-DLTIKIWDYQTKSCVATLEGHMVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERS-WCIAT | |||||||||||||
2 | 1l0qA | 0.20 | 0.16 | 5.21 | 2.04 | FFAS-3D | ---GSNPGAVISPDGTKVYVANAHSN-DVSIID--TATNNVIATVPAGSSPQ---GVAVSPDGKQVYVTNAS-----STLSVIDTTSN--TVAGTVKTGKSPLGLALSPDGKKLYVTNNG-----------------DKTVSVINTVTKAVINTVSVGR---SPKGIAVTPDGTKVYVANFDS-----SISVIDTVTNSVIDTVKVE--------AAPSGIAVNPEGTKAYVTNDKYFNTVSIDTGTNKITARIPVGPPAGIAVTPDGKKVYVALSFNTVSVIDTATNTITATAVGKN--------- | |||||||||||||
3 | 5oqlA | 0.13 | 0.11 | 3.84 | 2.97 | HHpred | -HFDAMNSLVYSPDGQRIVTAAD--DGKIKVWDVE-SGF-CIVTFTEHTSGV--TACEFAKKGSVLFTASL-----DGSVRAWDLI-RYRNFRTFTAPERSFTCMAVDPSGEVIAAGSI------------------DSDIHIWSVQTGQLLDRLS--GHEGPVSSLAFAPDGSVLVSGSWDRTA-----RIWSIFSRTQTSEP-------LQLQSDVLDVAFRPDSKQIAISTL-DGQLTFWSVSEAQQVSGVDGRNFNTIRYSMDGTCLLAGGNSKYICLYSTTTMVLKKFTVSVNLSLSGTQEF | |||||||||||||
4 | 1erjC | 0.18 | 0.16 | 5.18 | 1.61 | MUSTER | DHTSVVCCVKFSNDGEYLATGC---NKTTQVYRVSDGS--LVARLSDDSDL-YIRSVCFSPDGKFLATGAED-----RLIRIWDIENR-KIVMILQGHEQDIYSLDYFPSGDKLVSGSG------------------DRTVRIWDLRTGQCSLTLS---IEDGVTTVAVSPDGKYIAAGSLDR-----AVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL-DRSVKLWNLQTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLRNSVISVAVANGSSL | |||||||||||||
5 | 1l0qA | 0.20 | 0.16 | 5.21 | 3.09 | CNFpred | PVGSNPMGAVISPDGTKVYVANAH-SNDVSIIDTAT--NNVIATVPAG---SSPQGVAVSPDGKQVYVTNMA----SSTLSVIDTT-SNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNG-----------------DKTVSVINTVTKAVINTVSVG---RSPKGIAVTPDGTKVYVANFD----SMSISVIDTVTNSVIDTVKV--------EAAPSGIAVNPEGTKAYVTNVDFNTVSMIDTGTNKITARIPVPDPAGIAVTPDGKKVYVALSMNTVSVIDTATNTITATM------------- | |||||||||||||
6 | 3iytA3 | 0.14 | 0.12 | 4.22 | 0.39 | HHsearch-2 | INKKAVYHACFSEDGQRIASCG--ADKTLQVFKAE-TGE-KLLEIKAHEDEVL--CCAFSTDDRFIATCSV-----DKKVKIWNSM-TGELVHTYDEHSEQVNCCHFTNSHLLLATGSS------------------DCFLKLWDLNQKECRNTMF--GHTNSVNHCRFSPDDKLLASCSADGTL-----KLWDATSANERKLFDIHTSGHTGHHSTIQYCDFSPQNHLAVVALS-QYCVELWNTDSRSKVADCRGHLVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKMNGTNLKKIHVSPDFKV | |||||||||||||
7 | 4jspD | 0.10 | 0.09 | 3.25 | 1.75 | Neff-PPAS | -QDSQVNALEVTPDRSMIAAAGYQ---HIRMYDLNSNNPNPIISYDGVNK--NIASVGFHEDGRWMYTGGED-----CTARIWDLRSRNLQCQRIFQVNAPINCVCLHPNQAELIVGDQS------------------GAIHIWDLKTDH--NEQLIPEPEVSITSAHIDPDASYMAAVNS-----TGNCYVWNLTGGIGEVTQLIPKTKIPAHTRYALQCRFSPDSTLLATCSA-DQTCKIWRTSNFSLMTELSIKSMWGCAFSGDSQYIVTASSDNLARLWCVETGEIKREYGGHCLAFNDSV-- | |||||||||||||
8 | 3iytA3 | 0.14 | 0.12 | 4.21 | 0.62 | HHsearch | INKKAVYHACFSEDGQRIASCG--ADKTLQVFKAE-TGE-KLLEIKAHEDEVL--CCAFSTDDRFIATCSV-----DKKVKIWNSM-TGELVHTYDEHSEQVNCCHFTNSHLLLATGSS------------------DCFLKLWDLNQKECRNTMF--GHTNSVNHCRFSPDDKLLASCSADGTL-----KLWDATSANERFLFDIHTSGHTGHHSTIQYCDFSPQNHLAVVALS-QYCVELWNTDSRSKVADCRGHLVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVNLKKIHVSPILY- | |||||||||||||
9 | 5c2vB | 0.16 | 0.14 | 4.56 | 1.73 | PROSPECTOR2 | TDLPGPFHITMSPDGSTLFISN-QSGHSVTFVDARIQRKQEIKEIKVGDW---PSGIKISPDGKTAYVACSG--CMWNAIDVIDTG-RMEKVRSIYTSDYGPRMVEISPDGKTLVAILDT-------------VGSINRSVDFIDIASGRVVENRVI-HESSNLRDVVYTPDGKYIAVTHQTPKNWLPVCTIIETKAGGKVARLPLDDL--NNYDGNPYGMAMDPKGKYLYIGVRGMHRVTILDMDKVLVARVPTGLGPSSVCLSPDGKFCYAANYFNNVTVIRTAVD------------------- | |||||||||||||
10 | 6f3tA | 0.13 | 0.10 | 3.51 | 2.99 | SAM | --PKKLRSVKQASDLSLIDKES--DDVLERIMDEK-TAS-ELKILYGHSGPVYG--ASFSPDRNYLLSS-----SEDGTVRLWSLQ-TFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGH------------------DRVARLWATDHYQPLRIFA--GHLADVNCTRFHPNSNYVATGSADRTV-----RLWDVLNGNCVRI-------FTGHKGPIHSLTFSPNGRFLATGAT-DGRVLLWDIGHGLMVGELKGHTDCSLRFSRDGEILASGSMDNTVRLWDAIK-------------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |