Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220
| | | | | | | | | | | |
| Seq | MNNFPEIFDDESTCDYDKEIDHQELSDTFWCLMDFISSKHGKSVADINSGMNTLINIRKSLNGSGKVVSITDSYNKTYFHSQRGLTNVDSRINIDILKIDFISIIDDLQIIFRGLIYKDKGFLDSADLLDLDKKTTTRKFQEYFNILKIKIIEKIGMTKTFHFNIDFRNTISPLDKQRKCSISSSHKKTNRLNDLNNYITYLNDNIVLTFRWKGVGFGGLSLNDIKI |
1 | 4pw1A | 0.10 | 0.08 | 3.06 | 0.61 | SPARKS-K | | -NLLYLNSGEELNLGQEQELFEEEIVSFAANSVRILGGGSWTDFRYSGQDLRFLKDALTEKDGRRYLVNALDPNGLCYFSYNQDEREATADED---------QALGKLQEDWEKFLSDPLFYFFRCQLSDQRKEQYSDYIGDNLYTIWELVLKEFTSLSYDNHIYAYSND----------------------GGTSVLIYSPIEERFVGFSLKY------------- |
2 | 5zw3A | 0.14 | 0.10 | 3.31 | 0.43 | FFAS-3D | | -------------------------KAGMEVLLQILSVKQPKKILEIGTAIGSAIRMALELPS-AEIYTIERNEKRH-EEAVNNIKEFQLDDRIHVFYGDALELADAVH---------VTAPYDVI-FIDAAKGQYQNFFHLYEPMLSPDGV-------IITDNVLFKGLV-----------AEDYSKVAKIDEYNHWLMNVGDGLAISKKKR-------------- |
3 | 3cinA | 0.15 | 0.11 | 3.70 | 0.36 | HHpred | | ---------------------------------NLPIEAEGLED--SMTLKEAVDTLVKEWTELDVIVNTCEAFVPF--GNKEAIENNKERLTALRGGAAFVNVIPAFVELAKNLVVF-----------GDDGATFTADVLSHLAQR------NRYVKDVAQFNIDFLALTDDGKNKSK-----EFTKSSIVKDILGYLEPLGDKKFIAIHIEYVSFNGATDE-LM- |
4 | 3gygA | 0.12 | 0.11 | 4.02 | 0.54 | MUSTER | | KSEYKTLSTVEHPFPHTIDEQKQQDIYELEDYLEQKSKDGELIIG-WVTGIESILDKGRGKFRYFPHFIASDLGTEITYFSEHNFGQQDNKWNSRINEGFSKEKVEKLVKQLHENHNILLNPQTQLGKSRYKHNFYYQEQDEINDKKNLLAIEKICEEYGVSVNINRCNPLAGDPEDSYDIPIGTGKNETFLEKYN--LNTER-----------IAFG--SGNDVRL |
5 | 4bj6A | 0.18 | 0.11 | 3.45 | 0.67 | CNFpred | | ---------------------LQELGTNYLSIS-------------YVPSLSKFLSKNLRS--KNCIVFFDKVHIHQYAGIDRAVSETLSLVDINVVIIE---MNDYLMK---------------SDLM---------------MMVMRKINNDESIDHIVYFKFEQLDKLST-----STIIEPS-----KLTEFINVLSVLENNIAFKVLIYS------------- |
6 | 1vt4I3 | 0.26 | 0.13 | 3.95 | 0.91 | HHsearch-2 | | EYALHRSIV-------------------------------------------DHYNIPKTF--------------------------------------------------------------DSDDLIPPY-------LDQYFHIHHLKNIEHP--ERMTLFRMVFLDFRFLEQKIRHDSTNASGSILNTLQQLKFYKPYICDNDPNAILDFCSKYTALMAEDEAI |
7 | 2hnkB | 0.12 | 0.11 | 3.87 | 0.60 | Neff-PPAS | | --REPDSFLKKETGTLAQNMQIS--PEEGQFLNILTKISGAKRIIEIGTFTYSSLCFASALPEDGKILCCDVS-EEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFSSIDLLDADKENYPNYYPLILKLLKPGGLLIADNVL------------------WDGSVADLSHQEPSTVGIRKFNELVYNDSLVDVSLVPIA-DGVSLVRKRL |
8 | 1gr0A2 | 0.25 | 0.08 | 2.46 | 0.56 | HHsearch | | -----------------------------------------------------------------------------------------------------------------------------------GATITHRVLAKLFEDRGVQ------LDRTMQLNVDFLNMLED-----------VHI------GPSDHVGWLDDRKWAYVRLEGRAFGDVPLNEYK- |
9 | 1juoA | 0.10 | 0.07 | 2.63 | 0.53 | SP3 | | -------FPGQTQ---------DPLYGYFAAVAG----QDGQ----ID--ADELQRCLTQSGIAGGYKPFNLETCRLMVSMLD--RDMSGTMGFNEFK-ELWAVLNGWRQHFISFDTDRSGTVDPQELQKMGFRLSPQAVNSIAKRYKITFDD---YIACCVKLRALTDSFRRRDTAQQGVVNFP------YDDFIQCVMSV------------------------- |
10 | 3r3hA | 0.16 | 0.13 | 4.39 | 0.67 | PROSPECTOR2 | | KHLSLDISLREHPAKETSTMELANMPEQAQFMQMLIRLTRAKKVLELFTGYSALA-MSLALPDDGQVITCDINHAHPYW-REAKQEH-----KIKLRLGPALDTLHSLLNEG-----GEHQF----DFIDADKTNYLNYYELALKLVTPLIA--------ID-NIFWDGKVIDPN--------DTSGQTREIKKLNQVIK--NDSRVFVSLLAGMFLV------QPI |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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