Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40
| | |
| Seq | VEETSGQEMCRDVLPTTNCVDATCNSMCMEKWKATGLCLQTTERKRSCICTWRC |
1 | 2n2qA | 0.20 | 0.19 | 5.91 | 2.43 | SPARKS-K | | ----DGVKLCDVPSWSGHCSSSKCSQQCKDRFAYGGACHYQFP-SVKCFCKRQC |
2 | 2kpyA | 0.31 | 0.28 | 8.41 | 0.56 | FFAS-3D | | -----GSKLCEKTSKSGKCDNKKCDKKCIEWEKAQGACHKREAGKESCFCYFDC |
3 | 2n2qA | 0.20 | 0.19 | 5.91 | 0.41 | HHpred | | ---DGV-KLCDVPSWSGHCGSSKCSQQCKDREHAYGACHYQFP-SVKCFCKRQC |
4 | 2kpyA | 0.30 | 0.28 | 8.43 | 1.43 | MUSTER | | ----AGSKLCEKTTYSGKCDNKKCDKKCIEWEKAHGACHKREAGKESCFCYFDC |
5 | 2kpyA | 0.26 | 0.24 | 7.43 | 1.63 | CNFpred | | ----AGSKLCEKTSYSGKCDNKKCDKKCIEWEAQHGACHKREAGKESCFCYFDC |
6 | 2kpyA | 0.24 | 0.22 | 6.93 | 1.15 | HHsearch-2 | | ---AGS-KLCEKTSYSGKCDNKKCDKKCIEEKAQHGACHKREAGKESCFCYFDC |
7 | 5nceA | 0.26 | 0.22 | 6.85 | 2.30 | Neff-PPAS | | -------RMCKTPSGKGYCNNTNCKNVCRTEGFPTGSCDFHV-AGRKCYCYKPC |
8 | 2kpyA | 0.22 | 0.20 | 6.41 | 1.27 | HHsearch | | ---AG-SKLCEKTSYSGKCDNKKCDKKCIEEKAQHGACHKREAGKESCFCYFD- |
9 | 2n2qA | 0.18 | 0.17 | 5.41 | 0.56 | PROSPECTOR2 | | DGV----KLCDVPSGSGHCSSSKCSQQCKDRFAYGGACHYQFPS-VKCFCKRQC |
10 | 2kpyA | 0.27 | 0.24 | 7.41 | 0.24 | SAM | | -----GSKLCEKTSYSGKCDNKKCDKKCIEEKAQHGACHKREAGKESCFCYFDC |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|