Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240
| | | | | | | | | | | | |
| Seq | MDVLSKSSLKELLAHLERTPLEEAISYKIGTIPYQNVLISRNEYYNQPYPDVTSLIDGVAREGQRNVNGLIMSIISYVVSGSGHYIPNIGYTLLRRSILDILTKHDTGLNTNNINYDMIARNLTVSKMNCEQRKRMLICFKLLAYKDGNLNDYETYLNQNISLKQIAPNFIPGDMRTVMSNSDKLSIVGIPAYRLTQSTELSIRDDNAKSYKIGYVDWYNSSSFLREGNDFNLISLKDRDN |
1 | 4r04A3 | 0.10 | 0.10 | 3.54 | 0.59 | SPARKS-K | | VKNIIHNSIDDLIDEFNLLEVSDELYELKKLNEKYLISFEDISKNNSTYKSNSVYVETE-KEIFSKYSEHITKEISTIKNSIIDHTSQVNTLNAAFFIQSLIDYSSNKDVLNDLSSVKVQLYAQLFSTGLNTSIQLVNLISNAVNDT---------INVLPTITEGIPIVSTIDGINLGAAIKELLLVGVLAIDFIAEDINVFMKDDINTITGKYYKSIDFSISLVSKNQVKVNGLYLNES |
2 | 4xdnA2 | 0.15 | 0.09 | 3.06 | 0.58 | FFAS-3D | | ---IALRNCNELVQYMVNLQDELYQNWAS-VFQYVGVML------------------CIKLKQHRRVKTSFHGLLSFLNL----------------CYVNYLLNERFPIPED---ALQELRSTELHTVGPELYAKLALEMVIQLCKDGNLNEFKNFFDTN--------------KQSLVTNEGKGCVIKIM-----PRIALKV-------------------------------------- |
3 | 1r5zA | 0.13 | 0.12 | 4.01 | 0.33 | HHpred | | QEALD-LSFADFLRLLSETVYGGEL--AGQGL--PDVDRAVLRTQAKLVGDLPRLVTGEAREDLHNLQALLRAK----ATGRPLLLPTLR----EEVWRQAYEAQDPAGMLAGHPLARALRAVRQDLARVEALLAFEDVAKAAK-GLDQAENLRTAFKLQGSGLAPDAFFLKGGFARLMEGD-YAV---LDELSGTPFSG--LSVRDLKALERGLRCVLL--KEAKKQDPLG--------- |
4 | 2p1oB2 | 0.11 | 0.10 | 3.62 | 0.52 | MUSTER | | LDYIEDAGLEVLASTCKDRELR--VFPSEPFVMEPNVALTEQGLVSMGCPKLESVLYFCRQMTNAALITIARNRMTRFLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLSLGLLTFEYIGTSVAFAGDSDLGMHHVLSGCDSLRK-RDCPKALLANASKLETMRSLW-SVSFGACKLLGQKMPKLNVEVID---ERGAP-----DSRPESCPVERVFIYRTVAGPRDMPGF-VWNMDQ--- |
5 | 6brsA | 0.06 | 0.04 | 1.79 | 0.65 | CNFpred | | -------YRHRLLTQITMSAVTRQVRRQKAELPQDASSLVVRK--SDIGKTTAALGFFANVMGHDAAISAVLKEIERFKRY--PLNEQDITEITSDIREVAQRMSVTPETREFDWVQQLTIVWQQDRPYVGSQQRGKDALEALDTI--KGEDVNRHWQRWLAS-------------------PDTLAQFSVPG------------------------------------------------ |
6 | 2pffB | 0.16 | 0.16 | 5.23 | 0.88 | HHsearch-2 | | TLVKTKELIKNYITIMAKRPFDKALFRAVGEGNAQLVAIFGGQGNTDDYFEERDLYQTYHV-LVGDLIKFSAETLSELITTLDAEKPSNTPDKLSCPLIGVIAHYVVTAKLLGFTPGETAVAIAESFFV-SVRKAVLFFIGVRCYESLPPSILEDSLENNPMLSISNLTQEPAGEISLVNGAKNLVVSGPPQYGLN----LTLRKAGLDQSRIPFSELKFSNRFLPVASPFHSHLLVPASD |
7 | 4rykA | 0.10 | 0.09 | 3.42 | 0.61 | Neff-PPAS | | ---ITLSLFEEILKRIVPLDEFFFIYRDFSSTEDDSFWIDFVELSGKNDVVGQALLDKITLERTEQSEVRKAILHTRIQTINHYLRTSNISDEYKKIIHDYLWKQTWT------LEEVRIFSNGISFFEEEVQIHFYQILKSYEKYRYYDRGRLLFCHLF--ANLTDELIIQNKINYANLVLEKLKEASETSGSFNSAFYRIVANWKEGEVEKGYRQAKRAIQTWKELHYEAIADSVVLKQ |
8 | 6gw7A | 0.22 | 0.04 | 1.18 | 0.40 | HHsearch | | YHLEMPEMEDEFLEYCAKNPYEEAYL-KFGDKINHIVVLAHH------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
9 | 2p1oB2 | 0.10 | 0.10 | 3.52 | 0.45 | SP3 | | LDYIEDAGLEVLASTCKD--LRERVFPSEPFVMEPNVALTEQGLVSMGCPKLESVLYFCRQMTNAALITIARNRMTRFLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRSGLLT-DKVFEYIGTYAKKME---------MLVAFAGDSDLGMHHVLSGCDSLRKLDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLG-QKMPKLNVEVIDERGAPDSRPESCPVERVFIYRTVA |
10 | 3txaA1 | 0.09 | 0.09 | 3.35 | 0.67 | PROSPECTOR2 | | TTVKAGEAVEKLIDKITSNKDGTEATVSKGVADQNGKALNDSVSWDYHKTTFTATTHNYSYLNLTNDANEVNILKSRIPKEAEHINGDRTLYQFGMKANEILETQSSFNPYISTSYQNQFNSFLNKIPDRSGILQEDFDYQIVKGDGESFKLFSDRKVPVTGGTTQAAYRVPQNQLSVMSNEGYAINSGYIYLYWRDYNWVYPFDPKTKKVSATKQIKTHGEPTTPKGYDIFTVGIGVNGD |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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