Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180
| | | | | | | | | |
| Seq | MALLAEPVVTTFVRAFLILLLASAAIPKLRHGEEFFGVVRNFRLMPEWLARPFALVLPWLELGIAVGLVLPVTAPLAAGLAGGLMVLFGIAIAINVARGRTAIDCGCFRNGMKQKLSWLLVGRNAGLALAAFGLAWLLPVAPAAGPFDLAIGFAAAGLTMLLIYGASLLSGLQSGARSSQLSKG |
1 | 3rkoB | 0.10 | 0.09 | 3.18 | 1.12 | CNFpred | | --------LMWATLMLLGGAVGKSAQLPL-----QTWLADAMAGPTPVSALIHAATMVTAGVYLIARTHGLFLMTPEVLHLVGIVGAVTLLLAGFAALVQT-------------DIKRVLAYSTMSQIGYMFLALGVQ-----AWDAAIFHLMTHAFFKALLFLASGSVILACHHEQNIFKMGG |
2 | 3jacA | 0.10 | 0.09 | 3.26 | 1.15 | HHsearch-2 | | ILHAATDYALMFLADIIIIIFGFWAFGKHSAATDIASSLSDDQVPQAFLMLLVQFGTMVIDRAIWMFFILPAVTERMFQLWYFVKCIYFALSAYQIRCG---YPTRILG---------NFLTKKYNHLNLFLFQ-GFRVELRA--VMDWVW--TDTTLSLSNWMCVEDIYANIFIIKCSRETEK |
3 | 4pypA2 | 0.10 | 0.09 | 3.42 | 0.96 | SPARKS-K | | LFRSPAYRQPILIAVVLQLSQQLSGINAVFYY--STSIFEKAGVQQPVYATIGSGIVNTAFTVVSLFVVQRAGRRTLHLIGLAGMAGCAILMTIALALL-----------EQLPWMSYLSIVAIFGFVAFFEVPWFIVAELFSQGPRPAAIAVAGFSNWTSNFIVGMCFQYVEQLCGPYVFIIF |
4 | 5t77A | 0.11 | 0.09 | 3.30 | 0.93 | FFAS-3D | | LIFLSTPIIRFFTSKILIAYLPFYGIYST-----ISRSYHAIK--NTKTPFIAATIVSLSNIILDIIFG-LKYGPIGVALATSIAGIIGVLYLLFSVK----------------TFPIKDFLKISLNSLIMLFVIYLTDFTDNEFWFLIQILIGILVYLIFSSIFRDLIRRF------------ |
5 | 4ezcA | 0.10 | 0.07 | 2.61 | 0.28 | HHpred | | -----------------------------GDMKEFANWLKDKPQALQ---FVDWVLRGISQVISGILILVGLLNPWCALN--GCVGTVVSTLTAL-LLS---QD--------RSAITAGLQGYNATLVGILMAI-YSDKG--NYFWWLLFPVSAMSMTCPVFSSALNSVLSKWDLPVF------ |
6 | 5ezmA | 0.13 | 0.12 | 4.34 | 0.80 | MUSTER | | SGSVFYFLPLVIGGFLPWAGIFPKLWTAMRARFRPALMAGIW-ISRSKLPGYIVPVIPALGILAGVALDRLSPRSWGKQLIGMAIVAACGLLASPVVATLNANH---IPNSFYRAYAVWVAVAFVVMLLGIAVARLLLR--RGVLPSVAVYAMGMYLGFTVALLGHETVGRPASGADIAPLTPE |
7 | 3rkoC | 0.13 | 0.11 | 3.93 | 1.12 | CNFpred | | -------VEYLLMLGFFIAFAVKMPVVPL--HGWLPDAHSQ---APTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAEFAPIAMWLGVIGIFYGAWMAF---------------TDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHGLSAAGLFILCGQLYERIHTRDMRMMGGL |
8 | 1vt4I3 | 0.09 | 0.07 | 2.52 | 0.60 | HHsearch-2 | | ----------------------EYALHRSIVDYNIPKTFDSDDLIPPYLQYFYSHIGHHLKNI-------EHPERMTLF---RMVFLDFRFLEQKIRHD-STA-WNASG----SILNTLQQLKFYERLVNAILD-FLPKIEENLICSKYTDLLRIALM------AEDEAIFEEAHKQVQRGGGG |
9 | 3mktA2 | 0.06 | 0.06 | 2.58 | 0.97 | Neff-PPAS | | LGSTVVAAHQVALNFSSLVFMFPMSIGAAV-SIRVGHKLGETKGAAIAANVGLMTGLATACITALLTVLFRVVVALAMQLLLFAAIYQCMDAVQVVAAG------SLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWLQKQSDDVQLHL |
10 | 4ezcA | 0.08 | 0.06 | 2.35 | 0.54 | HHsearch | | -------------GYITG---DMKEFANWLPALQFVRGISQVVFVSNP--------------ISGILILVGLLPWCALN---GCVGTVVSTLTAL-LLS---QD--------RSAITAGLQGYNATLVGILMAI-YSDKG--NYFWWLLFPVSAMSMTCPVFSSALNSVLSKWDLPVFTLYNP- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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