Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100
| | | | | |
| Seq | MSKISKASSLCLLLLVFFLFSSQPALSLRGPKLQSSEPKSAQTLMNNSSSMNKINSGNAKSMIAGFFSHKFPLKGWPFPKYPPFTMVNPNIATNPSGAQEESAKLPSSPSKDNKDGRNA |
1 | 1pp1X3 | 0.09 | 0.08 | 2.87 | 0.91 | SPARKS-K | | -TELEISSIFSHCCSLLIGVVIGSSIKAGAEQIKKRFKTAA---LNRPSHGETATLFNPHEAIDWING-----QPWVGSFVLSLLTTDFE---SPGKEFDQIKLVASYAQ--------- |
2 | 4c0dC | 0.05 | 0.04 | 1.95 | 0.42 | FFAS-3D | | ---LTKEQLYQQAMEEAAWHHMPHPSDSERIRQYLPRHQMPPPHSDTVEFYQRLS---TETLFFIFYYLEGTKQSWRFHTKYMMWFQRHEEPKTITDEFEQGT---------------- |
3 | 4ep7A2 | 0.21 | 0.16 | 5.08 | 0.28 | HHpred | | -PYFGTLSSYGYVLMVLYYLIKPPVF----PNLLLSPLK-QEKIVDGFDKLESQNYSSLGSLLHGFFRFKFEPREKVLTKQEILAIEDPFEISNVGRT--------------------- |
4 | 2w0cT | 0.13 | 0.12 | 4.10 | 0.84 | MUSTER | | MANLTKNFVWILAAGVGVWFYQ---------KADNAAKTATKPIADFLAELQFLGSNYVKFPNAGFVTRDALQDDFIAYDDRIKAWLGTHDRHKDFLAEILDHERRVKPDASTASGVEL |
5 | 3hc1A | 0.11 | 0.04 | 1.52 | 0.49 | CNFpred | | YLGLDLLREAIFTCAIVDLFKTGKGPLNRSTL-------------------------WAHSLGVARIAKLI------------------------------------------------ |
6 | 2pffB | 0.17 | 0.16 | 5.25 | 0.55 | HHsearch-2 | | DSWESFFVSVRKAITVLFFI---GVRCYEAYPNTSLPPSLENNEGV-PSPMLSISN-LTQEQVQDNKTNSHLPAGKQVEISLVNGAKNLVVSAAPSGL--DQSRIPFSERKLKFSNRFL |
7 | 2w0cT | 0.04 | 0.04 | 2.09 | 0.92 | Neff-PPAS | | MANFLTKNFVWILAAGVGVW-----FYQKADNAAKTATKPIADFLAELQFLVNGSNYVKFPNAGFVLTRDALQDDFIAYDDRIKAWLGTHDRHKDFLAEILDHERRVKPDASTIRAASG |
8 | 3o6xA3 | 0.15 | 0.11 | 3.66 | 0.61 | HHsearch | | YTMKVQIESRVLGDLAINHVSYQNRLLENLCRMKEIFSSADRHRVSAVRDMKHKEN---FKEKAFAYEEEIDDEIWPLPKYRELLFT-------------------------------- |
9 | 1jvrA | 0.07 | 0.07 | 2.80 | 0.65 | SP3 | | GLSTHHWLNFLQAAYRLQPGPSDFDFQQLRRFLKLALKTPIWLNPIDYSLLASLIPKGYPGRVVEIINILVKNQVSPSAPAAPVPTPICPTTTPPPPPPPSPE--AHVPPPYVEPTTTQ |
10 | 1jvr | 0.10 | 0.09 | 3.42 | 0.67 | PROSPECTOR2 | | APRGLSTHHWLNFLQAAYRLQPGPSLALKTPIWLNPIDYSL---------LASLIPKGYPGRVVEIINILVKNQVSPSAPAAPVPTPICPTTTPPPPPPPSPEAHVPPPYVEPTTTQCF |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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