Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120
| | | | | | |
| Seq | LVDAMVAFKANMNKSTEKAMIEAVKNAKLIAPVIMDDLPDDLEPGQEYQANAKFMMVQQKNGKRFFPAFTEWLELLKWKNDPDCKTVTLSFDQYCALILRQNGEASGFVINPTEHNMVFTKEKLA |
1 | 2ebfX2 | 0.17 | 0.15 | 4.98 | 0.64 | SPARKS-K | | LMQKIDAIKAGSCDSVSPKVAARLKDGASITWWRREG------GMEFSHQMHTTASFKFA-GKEFAVDAS----HLQFVHDQLDTILILPVDDWALEIAQRN-RAINPFVEYVSKT----GNMLA |
2 | 4ev1A | 0.11 | 0.10 | 3.50 | 0.68 | FFAS-3D | | LGVIYQQLQQTKVDQEIKGAMDLLRQSGQQVPMFAVRFAPDQGY---------VPIKVGTGNEQVVPLFLSKQDAQGLPKHPKADIQVLDIDGVLQTLQDKNDWLNQVVLVPSPESREYIRTL-- |
3 | 4ev1A1 | 0.11 | 0.07 | 2.58 | 0.29 | HHpred | | ---------------SEQQIKEKLDSVPIYLVTNEKGLPL---------------SRPLKAGGSITGAYMSRQEAQAFINKKSLQVTAVPLGVIYQQLQQTKKDPNRLLF--------------- |
4 | 4ev1A2 | 0.09 | 0.07 | 2.77 | 0.69 | MUSTER | | -----------PVDQEIKGAMDLLRQ---------SGQQVNQFKSRFAPDQGYVPIKVGTGNEQVVPLFLSKQDAQGL-KHPKADIQVLDIDGVLQTLQDKNDWLNQVVL-PSPESREYIRTLPK |
5 | 4l6pA | 0.10 | 0.08 | 2.93 | 0.71 | CNFpred | | -------------ASLFKRIIDGFKVQLVNFQCKE--------------DGIIAQAVDD-SRVLLVSLEIGVEAFQEYRCD-HPVTLGMDLTSLSKILRCGNTDTLTLIADNTPDSIILLFEDTK |
6 | 4ev1A | 0.10 | 0.09 | 3.30 | 0.43 | HHsearch-2 | | LGVIYQQLQQTPVDQEIKGAMDLLRQSFKSVPMFAVR----------FAPDQGYVPIKVGGNEQVVPLFLSKQDAQGLLGHPKADIQVLDIDGVLQTLQDKNTWLNQVVLVPSPESREYIRTLPK |
7 | 6c5dA | 0.08 | 0.07 | 2.84 | 0.64 | Neff-PPAS | | DNQILHNKRISIKKGILEHFFDKANNQDEVDSGILSNYNDK-------------VSILLATDPRLGGGIKRIISAEVDKIKENRLDYELKIDDILLFTYISYKKYTLEIILLADTRYNVLNGLIN |
8 | 4ev1A1 | 0.11 | 0.07 | 2.62 | 0.45 | HHsearch | | -------------MLSEQQIKEKLDSVPIYLVTNEKGL---------------PLSRPLKAGGSITGAYMSRQEAQAFINKKSLQVTAVPLGVIYQQLQQTKKDPNRLLFA-------FK----- |
9 | 4ev1A2 | 0.09 | 0.07 | 2.72 | 0.51 | SP3 | | -----------PVDQEIKGAMDLLRQ---------SGQQVNQFKSRFAPDQGYVPIKVGTGNEQVVPLFLSKQDAQGLLGHPKADIQVLDIDGVLQTLQDKNDTWL--------NQVVLVPESRE |
10 | 4cdoA | 0.11 | 0.10 | 3.46 | 0.47 | PROSPECTOR2 | | MGWQVDQAILSEEDMKMDEVLYSIAEKVVIYLVDITEVPDFNKMYELYRNKHIMIDLGTGNNNKINWAMEDKQEMV----------------DIIETVYRGARKGRGLVVSPKDYSPYPSPGAVS |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|