>PF07138 (334 residues) MSLAAKLIVYNYYAKYNEVHDVYGESYHHYRIVQEYLSESYVNGMSCIERDVTAMRRLKS GSCTFDEAVKMIDACDSIKSLSHWFSTSEMMGINDNVREVLEQIDAVVPVSVRVQNGWQI FSLNNFEREISQDMLDCLQIILGRFEYFMRNGKLLRLSTVFNPNNNVVGWWYNKFCVVTY VHRIMYQSVPAELAPRLSEAVKKFIRLRKSDYDDRLHLDESYNCPRVIAEIYGRFCGIGK EHFSKHKLSCMHILFQYLRGKTTQEEESFPCYRVIKDFGRQCKDVYKNLKDVFDVLHAHS MSDKDKNSLMDLLCVMDCEEIDVDCFYYIFEAFL |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | MSLAAKLIVYNYYAKYNEVHDVYGESYHHYRIVQEYLSESYVNGMSCIERDVTAMRRLKSGSCTFDEAVKMIDACDSIKSLSHWFSTSEMMGINDNVREVLEQIDAVVPVSVRVQNGWQIFSLNNFEREISQDMLDCLQIILGRFEYFMRNGKLLRLSTVFNPNNNVVGWWYNKFCVVTYVHRIMYQSVPAELAPRLSEAVKKFIRLRKSDYDDRLHLDESYNCPRVIAEIYGRFCGIGKEHFSKHKLSCMHILFQYLRGKTTQEEESFPCYRVIKDFGRQCKDVYKNLKDVFDVLHAHSMSDKDKNSLMDLLCVMDCEEIDVDCFYYIFEAFL | |||||||||||||||||||
1 | 2qnaA | 0.11 | 0.10 | 3.71 | 1.03 | CNFpred | VRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAEAAYEAA-EPATYCLSSSFELIVQKLLETTDRPDGHNLRSSAYESLMEIVKNSAKDCYPAVQTTLVIMERLQQVLQSLLCATLQNVLRKVALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGG--FLKYMEAFKPFLGIGLKNYA-----------EYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLK | |||||||||||||
2 | 5h7cA | 0.13 | 0.12 | 4.17 | 1.00 | PROSPECTOR2 | LAEAKSLNVNQAVKQLAEKAKEATDKEEVIEIVKELAELAKQSTDSELVNEIVKQLAEVAKEATDKELVIYI-----VKILAELAKQSTDSELVNEIVKQLAEVAKEATLAELAKQSTDSELVNEIVKQLEEVAKELVEHIEKILEELEQQSAFYEILSLPNLNEEQRNAFIQSLAVKQLAEKAKEATDKEEVIEIVKELAELAKQSTD---------------SELVNEIVKQLAEVAKEATDKELVIYIVKILAELAKQSTDSELVNEIVKQLAEVAKEAKELVIYIVKILAELAKQSTDSELVNEIVKQLEEVAKEATDKELVEHILKKQS | |||||||||||||
3 | 5ifeC | 0.10 | 0.10 | 3.54 | 0.80 | SPARKS-K | KSWQARHTGIKIVQQIALMGCALPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYGILKPLWKGIRQAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFDEEMKKICGTDGVEANYIKTEILPPFFKHYRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLDIDHKLEEQLIDGILYAFQEQTTED-------------SVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSA--KVRQQAADLISRTAVVMKTCEKLMGHLGVVLYEYLGEEYPEVLGSILGALKGMHKMTPDLLPRLTPILK | |||||||||||||
4 | 4akkA | 0.10 | 0.09 | 3.26 | 0.96 | FFAS-3D | ---VVDWFARARRLQKQQL-HQLAQQGTLAGQISALVHM------LQCERGASNIWLCSGGRLYCRAGAALVDQLTRFYAALEPARDAASSALCWRIACAVWYLPQLAALRKRVRDREI------AAEEATGQFSRIIRHLLNIVPQLNDSIDDPQIAGRM-----------VALYSFMQGKEFARGQFSDELRQQLQPCFDSFQALAQPPQTAL--FAEQCQASLEIEQLRRVACGETALRWFCAQTQRLEQLRGVLLEGSIALRLDKQLLPLVRQQAHELQQLSGQLASLKDALEERKLIEKAKSVLMTYQGMQEEQALRKMAMDKIARALL | |||||||||||||
5 | 4kx7A3 | 0.13 | 0.08 | 2.70 | 0.29 | HHpred | ----------------------------------------------------------------------------------------------ATWDSIATALHKTFSSADRASL-------------------------IDDAFALARAKVALNLTKYLKREENF-LPWQRVISAVTYIISMFEDD-K-ELYPMIEEYFQGQVKPIADSLGWND--AGDHVTKLLRSSVLGFACKMGDRE----ALNNASSLFEWLNGTSLPVNLRLLVYRYGMQNSG-NEISWNYTLE----QYQKTSLAQEKEKLLYGLASVKNVTLLSRYLDLLKDT-- | |||||||||||||
6 | 4plqA | 0.12 | 0.10 | 3.39 | 0.62 | MUSTER | -----------------------GP-----SELPQMVQQLNSPDQQELQSALRKLSQIASGG---NEQIQAVIDAGALPALVQLLSSPN-EQILQEALWTLGNIASGGNEQIQAVIDAGALALVQLLEQILQEALWTLGNIANEQIQAVIDAALPALVQLLSSPNEQI-----LQEALWTLGNIASGGNEQIQAVIDAGALPALVQL----------SSPNEQILQEALWTLGNIASGGNEQIQAVIDAALPALVQLLSSPNEQ---LQEALWTLGNIASGGNEQKQAVKEAAEPALEQLQSSPNQKEAQEALEKIQ----------------- | |||||||||||||
7 | 4rxhB | 0.10 | 0.09 | 3.40 | 0.97 | CNFpred | PHTLVQFEAAWALTNIASGSATQTQVVIEAGAVPIFVELLGSPEPDVREQAVWALGNIAGD---SPQCRDYVLSCGALRPLLTLLGDSRKLSMLRNATWTLSNFCRGKPQPDWNTIAPALPVLAKLVYSVLIDACWAISYLSDKIQAVIEAGIPRRLVELLMHA-----STSVQTPALRSVGNIVTG--DDVQTQVIIGALPCLLSLLSS----------KDGIRKEACWTISNITAGNSAQIQSVIDNIIPPLIHLLSHA---------DLKTRKEACWAISNATSGKPDQIRYLVAQG----CIKPLCDLLACP-DNKIIQVALDGLENILK | |||||||||||||
8 | 2pffB | 0.17 | 0.15 | 4.94 | 0.66 | HHsearch-2 | FFIASQLQ-----EQFNKILPEPTEEPTTPAELVKFLGYSSLVEPSKVQFDQVLNLC-------LTEFENCYLEGNDIHALAAKLLQEND-TTLVKTKELIKNIMAKRPFDKKSNSALAIFTDDYFE-----ELRDLYQVLVGDLIKFSAETELIRAEKVFTQGLNILEWDKPISCPLIGVIQL-----------AHYVVTAKLLGFTPGELRSYLKGATGHSTAVAIAET-----DSWESFFVSVRKAITVLFFIGVRCYEAYLSISNLTQEQVQDYVNKTNSHLQSLYGLNLTLRAKAPSDQSRIPFSEFLPVASHSHLLVPASDLINKDLV | |||||||||||||
9 | 3sf4A | 0.06 | 0.06 | 2.45 | 0.78 | Neff-PPAS | -DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLG-----------NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE------------------FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLGDKSGELTARLNLSDLQM | |||||||||||||
10 | 1vt4I | 0.15 | 0.12 | 4.14 | 0.86 | HHsearch | MTLKSLLLKYLDCRPQDLPREVLTTPRRLSIIAESIRDGKHVNKLTTIELNVHIPTILLS-LIWFDKSDVM-VVVNKLHKYSLVEKQPKESSIPSIYLELKVKLENEPPYLDQYFYSHIGHHLKNI--EHPERMTLFRMVFLDRFLE----QKIRHDSTAWNASGSLNTLQQLKF----YKPYICDN-D--PKYERLVNAILDFLPKIE----EN---LICSKYTD-----LLRIALMAED------EAIFEEAHKQVQRGGGGGGGGGGGGGG----GGGGGG----------------GGGGGGGGGGGG--GGGGGGGGGGGGG--GGGG- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |