Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200
| | | | | | | | | | |
| Seq | SITASIILGLIGMGLTIAALLTPSWQVVNLREYNSIHEHGLWLDCTRHSRDGERPLLQRYATITEPLHCVYKFDYDKYSGTFDLEDDNSPVGEVNRHKFYGWHTSTLILLFLAILCTFLATCLGICSCCYGSISVVYTCITLGTTIMSSLAVGIFFFYSHRADNRFIKGIVGTYEQRVGTAFFLQLAACFFYFFSFIVSMLGVYFSFQ |
1 | 6akfA | 0.15 | 0.12 | 4.04 | 2.61 | SPARKS-K | | LEITGTSLAVLGWLCTIVCCALPMWRVSAFIGTAQITWEGLWMNCVVQSTGQ------------------------MQCKMYDSLLA-----------LPQDLQAARALIVVSILLAAFGLLVALVGAQATNAVIVAGVLFLLAALLTLVAVSWSANTIIRDFYN--PLVPEAQKREMGAGLYVGWAAAALQLLGGALLAAS------ |
2 | 5vhxE | 0.13 | 0.10 | 3.52 | 2.06 | FFAS-3D | | -ALLAVALNLLALLFATTAFLTTYWCQGTQRVQLRRFHTGIWYSCEEG-------------------------------------EKCRSFIDLAPASEKGVLWLSVVSEVLYILLLVVGFSLMCLELLGLKLNAFAAVFTVLSGLLGMVAHMMYTQVFQVTVSL-GPEDWRPHSWDYGWSFCLAWGSFTCCMAASVTTLN-SYT--- |
3 | 3x29A | 0.19 | 0.14 | 4.51 | 1.79 | HHpred | | LQLLGYFLALGGWVGIIASTALPQWKQSSYAGDAVGLYEGLWMSCAS-----------------GQVQCKL-YD--------------------------GHIQSARALMVVAVLLGFVAMVLSVVGMKNARVAISGGALFLLAGLCTLTAVSWYATLVTQ---EFFNSTPVNARYEFGPALFVGWASAGLAMLGGSFLAAT------ |
4 | 5b2gA2 | 0.15 | 0.12 | 3.90 | 2.03 | MUSTER | | LQVMGIALAVLGWLAVMLCCALPMWRVTAFIGTSQTIWEGLWMNCVVQS--------------TGQMQCKVYDSLLALP---------------------QDLQAARALVIISIIVAALGVLLSVV-SAKAKTMIVAGVVFLLAGLMVIVPVSWTAHNIIQDFYN--PLVASGQKREMGASLYVGWAASGLLLLGGGLLCCS------ |
5 | 4p79A | 0.16 | 0.12 | 4.15 | 1.31 | CNFpred | | VETFGFFMSALGLLMLGLTLSNSYWRVST-----NTIFENLWYSCATDSL---------------VSNCWDFP---------------------SMLALSGYVQGCRALMITAILLGFLGLFLGMVGLRKAKLLAIAGTLHILAGACGMVAISWYAVNITTDFFNPLY----GTKYELGPALYLGWSASLLSILGGICVFSTAAAS-- |
6 | 6akfA | 0.16 | 0.13 | 4.30 | 2.30 | HHsearch-2 | | LEITGTSLAVLGWLCTIVCCALPMWRVSAFIGSAQITWEGLWMNCVVQST--------------GQMQCKMY-DSLL-----------------ALP---QDLQAARALIVVSILLAAFGLLVALVGAATKAITIVAGVLFLLAALLTLVAVSWSANTIIRDF--YNPLVPEAQKREMGAGLYVGWAAAALQLLGGALLAAS------ |
7 | 5vhxE | 0.11 | 0.09 | 3.29 | 2.48 | Neff-PPAS | | RALLAVALNLLALLFATTAFLTTYWCQGTQRVQLRRFHTGIWYSCEEGEKCRS------------------------FIDLAPAS---------EKGVLWLSVVSEVLYILLLVVGFSLMCLELLHSSDGLKLNAFAAVFTVLSGLLGMVAHMMYTQVFQVTVSLGPEDWRPH-SWDYGWSFCLAWGSFTCCMAASVTTLNSYTK--- |
8 | 6akfA | 0.16 | 0.13 | 4.30 | 3.24 | HHsearch | | LEITGTSLAVLGWLCTIVCCALPMWRVSAFIGSAQITWEGLWMNCVVQST--------------GQMQCKM-YDSLL-----------------ALP---QDLQAARALIVVSILLAAFGLLVALVGAATKAITIVAGVLFLLAALLTLVAVSWSANTIIRDF--YNPLVPEAQKREMGAGLYVGWAAAALQLLGGALLAAS------ |
9 | 5vhxE | 0.13 | 0.11 | 3.67 | 1.67 | PROSPECTOR2 | | KALLAVALNLLALLFATTAFLTTYWCQGTQRVQLRRFHTGIWYSCEEG------------------EKCRSFIDLAPAS-----------------EKGVLWLSVVSEVLYILLLVVGFSLMCLELLHSSDGLKLNAAVFTVLSGLLGMVAHMMYTQVFQVTVSLGPED-WRPHSWDYGWSFCLAWGSFTCCMAASVTTLNSYT---K |
10 | 5b2gA | 0.16 | 0.12 | 4.14 | 1.38 | SAM | | -QVMGIALAVLGWLAVMLCCALPMWRVTAFIGSSQTIWEGLWMNCVVQS--------------TGQMQCKV-YDSLL-----------------ALP---QDLQAARALVIISIIVAALGVLLSVVG-DESKTMIVAGVVFLLAGLMVIVPVSWTAHNIIQ---DFYNLVASGQKREMGASLYVGWAASGLLLLGGGLLC-------- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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