Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180
| | | | | | | | | |
| Seq | ENCNCDVVCPCLLSTNAQLTSKPTQGVCDVALVFHIDQGNYGDVRLDDLNVAMIAHTPGPMAEGNWTAAAYIDERADDRQMEALGAIFTGAAGGPMAAFAPMIGNNLGAKKTPIRYQVDGKKRSAEIPGVMHMAVEPLPTMREDGEMWAATGHPVNPDRLTMAMGVQGSTFSDHGMNWDNSGRN |
1 | 1gff2 | 0.12 | 0.10 | 3.64 | 0.86 | SPARKS-K | | FQKFISKHNAPINSTQLAATKTPAVA------APVLSVPNLSNATTTHSGLCHVVRIDETNPTNHHALSIAGSSNVPAD-MIAFAIRFEVADGVV--------PTAVPYDVYPIETFNNGKAISFK-----DAVTIDSHPRTVGNDVYAGIMLWSNSGVLSVNQVNREATVLQPLK-------- |
2 | 1xy3C | 0.08 | 0.07 | 2.75 | 0.44 | FFAS-3D | | --------------------KAARYGKDNVRVYKVHKDEKTGVQTVYEMTVCVLLEIETSYTKADNSVIV-----ATDSIKNTIYITAKQNPVTPPELFTHFIEKYNHIHAAHVNIVCHRWT-RMDIDGKPHPHSFIRDS---EEKRNVQVDVVEGKGIDIKSSLSGLTVLKSTNSQFWGFLRD |
3 | 5h5yA1 | 0.13 | 0.08 | 2.83 | 0.31 | HHpred | | ------------------------------------------LKVIDEKTPILFQWFPERRIESDRMIGIFVDGDFSVNQKTAFSKLERDFENHWFDFFRNLLSFGEGCIYLDMDMILTGKLGTIYAPDGISMHVDR-RNDSVENSAIVNRSHPALLE-------------------------- |
4 | 5xxzA | 0.07 | 0.07 | 2.69 | 0.82 | MUSTER | | DD---QKQTPIWSSQAGAGASAIESTAWYGITA--------RGSKVPGDYQYVVTYRDEHGKEHQKQYTISVNDKKPITQGR--FDTINGVDHFTPDKTKALGSSGIVREEVFYLAKKNGRKFDVTEGKTVSDNKVYIPKNPDGSYTISKRDGVTLSDYYYLVEDRAGNVSFATLRDLKAVGKD |
5 | 5iweA | 0.11 | 0.05 | 1.78 | 0.61 | CNFpred | | -----------------------------------------------DMAINCFAGAG-----RRWRSRMFSPA-ATGSAAGPLAIHLARH-GQPVEILQGVEI--GRPSLMFAKAEGRAQLTRVEVSGNGVTFGRGTIVL------------------------------------------- |
6 | 4i4m6 | 0.11 | 0.03 | 1.18 | 0.50 | HHsearch-2 | | ------------------------------------------------STYTVRGSF----PARDGPQQFEKEVEAPNE-NVAEERVYSD------------FGSQHNLKRTQITIEEVA---------------------------------------------------------------- |
7 | 1gff2 | 0.11 | 0.10 | 3.53 | 0.78 | Neff-PPAS | | ---STQLAATKTPAVAAPVLSVPNLSRSTILINATTTAVTTHS------GLCHVVRIDETNPTNHHALSIAGSLSNVPADMIAFAIRFEVADGVVPTAVPA------LYDVYPIETFNNGKA--ISFKDAVTIDSHP---RTVGNDVYAGIMLWSNAWTASTISGVLSVNQVNREATVLQPLK- |
8 | 2amfE3 | 0.12 | 0.04 | 1.55 | 0.36 | HHsearch | | ----------------------------------SM----AAGISVGDLPLLRI--MPNMAQILQSSTALTGNALVSQELQARVRDLTDSF-GSTFD-----ISEDFDTFTA-L----AG---------------------------------------------------------------- |
9 | 3n6rA2 | 0.07 | 0.04 | 1.60 | 1.04 | SP3 | | -------------------------------------------------------------------------VNLPETDLRRVAAAAA-AMHRVAEIRRTRVSGRMDNHERR-----VGTEWVVTLQGDFPVTIAADHDGDDGSSMRVTSDWTPGDQLANLMVDGAPLVLKSGGFRIRTRGAD |
10 | 1r6vA2 | 0.13 | 0.12 | 4.14 | 0.67 | PROSPECTOR2 | | SKAKDLASLP------EIKSQGYTQGGVEEFQVVVT--DAKGNFGVPTVFVSMMRDNGSCYTGPDGIARFPIDDRALAPY--------DGESIPGGYAIALRMAEERQASFVGFGVSPDATQLNVNFNSTLQVKFSTNLSTLKDPQFVVVDPLLRGATDITIQGTTTWTIIDDFGGLNLGTDSQ |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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