>PF06980 (597 residues) SFNIGEIEGQFDSSLSIGASWSTANPNKNLIGVNNGGKGLSQTSDDGHLNFKKGETFSKI FKGIHDLELKYGDTGVFVRGKYWYDFELKDENREFKDISDSNRKEGAKSSGAELLDAFVY HNYSIGDQPGSVRFGKQVVSWGESTFIGGGINSINPIDVSAFRRPGAEIKEGLIPVNMFY VSQSLTDNLSAEAFYQIEWDQTVVDNCGTFFSQPDIIADGCSDNLRVLNSSRALSPQALA GLSAFGVDVNSEGVKVPRGADRDARDSGQFGVAFRYMFEPLDTEFGAYFMNYHSRAPIFS ATRAPQALFNLVNNPLASPAVRALAPLIIAGNSQYFVEYPEDIRLYGLSFSTTLPTGTAW SGELSYRPNAPVQLNSTDILFAGVRPIDRAPYNNASVLTGTPGQDLHGYRRKEVTQFQTT FTHFFDQVMGASRLTVVGEVGVTHVGGLESNSKARYGRDPVYGPGPLPNGTCATLNGATI VGSGLGSSTANLDRNCENDGFTTSTSWGYRARAIWDYNDVFAGVNLKPSVAWSHDVSGYS PGPGGNFEEGRKAVSLGLDAEYQNTYTASLSYTNFFDGKYTTVDDRDFVALSFGVNF |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 500 520 540 560 580 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | SFNIGEIEGQFDSSLSIGASWSTANPNKNLIGVNNGGKGLSQTSDDGHLNFKKGETFSKIFKGIHDLELKYGDTGVFVRGKYWYDFELKDENREFKDISDSNRKEGAKSSGAELLDAFVYHNYSIGDQPGSVRFGKQVVSWGESTFIGGGINSINPIDVSAFRRPGAEIKEGLIPVNMFYVSQSLTDNLSAEAFYQIEWDQTVVDNCGTFFSQPDIIADGCSDNLRVLNSSRALSPQALAGLSAFGVDVNSEGVKVPRGADRDARDSGQFGVAFRYMFEPLDTEFGAYFMNYHSRAPIFSATRAPQALFNLVNNPLASPAVRALAPLIIAGNSQYFVEYPEDIRLYGLSFSTTLPTGTAWSGELSYRPNAPVQLNSTDILFAGVRPIDRAPYNNASVLTGTPGQDLHGYRRKEVTQFQTTFTHFFDQVMGASRLTVVGEVGVTHVGGLESNSKARYGRDPVYGPGPLPNGTCATLNGATIVGSGLGSSTANLDRNCENDGFTTSTSWGYRARAIWDYNDVFAGVNLKPSVAWSHDVSGYSPGPGGNFEEGRKAVSLGLDAEYQNTYTASLSYTNFFDGKYTTVDDRDFVALSFGVNF | |||||||||||||||||||
1 | 5mz9A | 0.13 | 0.12 | 4.07 | 1.23 | SPARKS-K | -ANTFLVKEDSKNVTAYTFATPITDSKSDLVSLAQ---------------LDSSYQIADQTIHNLFVLFKSRDVKV----------KYESSGSNNISFDSTS-----QGEKP----SYVVEFTNSTNIGIKWTMVKYQLDVPNVSVLKNLI-LEQPLNSSLAKEKGKTQREVHLPSPNASTGFKLT---TGNAYRKLS-------ESWPIYEPIDGTKQGKGKDSSGWSSTEENEKNDAPSVSGGSSSGTFNKIGILF-DDQTPRNTSKLAVHIVVMGNSFLPSM-WYWVVERSNKPTWNLDWGEDKQKQENQLGYKETTSTNSHNFHSKSFTQSGIDSVNDQIIFSGFKAG------SVGYDSSSTKDQALAWSTTDLVTNDTGLNGPINGSDTFSFVVTTGPIKTAYPVKKKINSLINATPL--NSYGDEGIGVFDALGLNYNFK--SNQERLPSRTDSAKSSADSTGSDTKVNSNTIIDADSVTTFSGLKSIAP-DGFANSIAFSVGLKAGIDPNPVMSGVVLTRGGVVRLNFNNIAPISFSFFTESAVDLTTFKEVTYNQLWSYIFDSKPSHDGKQTPVTDNGFSVITVSRTG | |||||||||||||
2 | 3rbhA | 0.11 | 0.07 | 2.61 | 1.12 | FFAS-3D | ---------------NFGLDVKIT-------------GESENDRDLGTAPGGTLNDIGIDLRPWAFGQWG-DWSAYFGQAVAATDTIETDTLPDKS--------------YLAAREFWVDYAGLTAYPGEHLRFGRQRLREDSGQWQDTNIEA-------------------------LNWSFE-TTLLNAHAGVAQRFSEYRTDL---------------------------------------------------DELAPEDKDRTHVFGDISTQ-WAPHHRIGVRIHHADDSG----------------------HLRRPGEEVDNLDKTYTGQLTWLGIEATGDAYNYRSSP-LNYWASATWLTGD--------------------------RDNLTRIATGKQSGDVNAFGVDLGLRWNIDEQ-------WKAGVGYARGSGGGKDGEEQFQQTGLESNRSNFTGTRS--------------------RVHRFGEAFRGELSNLQAATLFGSWQLREDYDASLVYHWRVDDDSDIGTSGINAALQPGEKDIGQELDLVVTKYIRFRGGLFKPGDGPGTDSTHRAFVDFIWRF | |||||||||||||
3 | 3rbhA | 0.10 | 0.06 | 2.38 | 0.73 | HHpred | -------------NFGLDVKITGESENDRDLGT--------APG-------GTLNDIGIDLRP-WAFGQ-WGDWSAYF-GQAVAAT--DTIET---DTL-------PDKSYLAAREFWV--DYAGLYPGEHLRFGRQRLREDSGQWQD------T-------------------NIEALNWSFET-TLLNAHAGVAQRFS--EYRTDLD---------------------------------------------EL----APEDKDRTHVFGDISTQWAP-HHRIGVRIHHADDSGHLRR--PGEEV--------------------D-NLDK----TYTGQLTWLGIEATGDAYSPLNYWASATWLTGDRDNLTRIA--------------------------TGKQSGDVNAFGVDLGLRWNIDE-----QWKAGVG--YARGSGGGKDGEEQFQQTGLESN-RS---NFT----------GTSRVHRF----GEAFRGELSNLQAATLFGSWQLR---EDYDASLVYFWRVDDDSDIGTSALQPGEKDQELDLVVTKYFKPSALIRFRGGLFKPGDGPGTDSTHRAFVDFIWRF | |||||||||||||
4 | 6e4vA | 0.14 | 0.12 | 4.26 | 1.05 | MUSTER | LQTLGEISKSQADSDRALYYSRFQIDN-PTYFESRWNLGDALDMALTGLMTGTGNPVRKH-EFKGDVSAEYGSWN-KERYVADLQSPLTEDGKIR--GGYQNNDSWLDRYNSEKTFFSGIVDADLGDTTLSAGYEYQRIDVNSPTWGGLPRWNTDGYDRARSTAPDWAYNDKEINKVFMTLKQQFADTWQATLNATHSEVEFD------------------SKMMYVDAYVNKADGMLVGPYSNYGPGFDYVGGTGWNSGKRK-----VDALDLFADGSQHNLMFGGSYSKQNNRYFSSWANIFPDEIGSFYNFNGNFPQTDWSPQSLAQDDAATRVTLADPARYTNWRVDTLTYSHTTPYAGLVFDIN-----DNWSTYASYTSIFQPQNDRDSSGKYLAP---------ITGNNYELGLKSDWMN----SRLTTTLAIFRIEQDNVAQSTGTPIPGSNGETAYKAVDGT--ELNGAITDNWQLTFGATRYIAEDNEGNAVNPNLPRTTVKMFTSYLPVMPELTVGGGVNWQNRVYTDTVTPYGTFQGSYALVDLFTRYQVTKSLQGNVNYDTNVEGSIVYGTPR-NFSITGTYQF | |||||||||||||
5 | 2fcpA | 0.09 | 0.08 | 2.97 | 1.72 | CNFpred | -----------YMLERAEIMRGP---VSVLYGKSSPGGLLNMVSKRPTTE--PLKEVQFKLFQTGFDFSDSLVYSYRLTGLARSANAQQ--------------------KGSEEQRYAIAPAFTWRKTNFTFLSYFQNEPETGYYGWLPKEGTVERLPTDFNEGAKNNTYSRNEKMVGYSFDHEFNDTFTVRQNLRFAENKTSQNS---VYGYGVCSDPANAYSKQCAALAPADKG----------HYLARKYVVDDEK-------LQNFSVDTQLQSKFHTLLTGVDFMRMRN---DINAWFGYDDSVPLLNLYNPSHHHHHHGSVNT-PANSGPYRILNKQKQTGVYVQDQAQDKVLVTLGGRYD---WADQESLNRVA-----------------------GTTDKRDDKQFTWRGGVNYLFD-----NGVTPYFSYSESFEPSSQVGNIFAPSKGKQYEVGVKYVPRPIVVTGAVYNLTKTNNLMADPEGSFFSVEGGEIRARGVEIEAKAALS---ASVNVVGSYTYTDAEYTTDTTYKGNTPVPKHMASLWADYTFFSGLTLGTGGRYTGSSYGNSFKVGSYTVVDALVRY | |||||||||||||
6 | 3rbhA | 0.10 | 0.06 | 2.38 | 1.52 | HHsearch-2 | ------------KNFGLDVKITGESENDRDLGT--------A-P------GGTLNDIGIDLRP-WAFGQ-WGDWSAYF-GQAVAAT--DTIET---DTL-------PDKSYLAAREFWV--DYAGLYPGEHLRFGRQRLREDSGQWQD------T-------------------NIEALNWSFET-TLLNAHAGVAQRFS--EYRTDLD---------------------------------------------EL----APEDKDRTHVFGDISTQWAP-HHRIGVRIHHADDSGHLRR--PGEEV--------------------D-NLDK----TYTGQLTWLGIEATGDAYSPLNYWASATWLTGDRDNLTRIA--------------------------TGKQSGDVNAFGVDLGLRWNIDE-----QWKAGVGYA--RGSGGGKDGEEQFQQTGLESN-RS---NFT----------GTSRVHRF----GEAFRGELSNLQAATLFGSWQLR---EDYDASLVYFWRVDDDSDIGTSALQPGEKDQELDLVVTKYFKPSALIRFRGGLFKPGDGPGTDSTHRAFVDFIWRF | |||||||||||||
7 | 4zgvA | 0.07 | 0.06 | 2.65 | 1.87 | Neff-PPAS | DPKLDKSSGKISYRTTRDSWTKY-----------HISEVISEEFYSGTNLYYQPKFKKHFYSATFNQPLS-DKAGFIFAYNRQQSDIPYYHE----------YLQQWDDQERINETYLLKGTYLTDSG-DIIRMTGMYSPHESKFYKKDVKNGGFTNSGG-------------GYRFNMEWEHNASWKMTSLAGYQYTEDKTEHEADSYQTWRRFSSGFVSNVIDWSSSGGANGQNSNIGGYGSFATNTSSFSLKQDYELNPVSWYGINHQIDFGWETDFYTSRYRRFSDVYTGGVLVVPTGASAGSVVCQSGDELCIPGEQYSRTRILYPERNVQVSNVNIAPRFSASYDVFGDRSTRLFGGANRYYAGN---ILAYKMRQGIGSNIQESRISPTAPWTTPTLRTGTNYNVSDLNTPYSDELSLGLSQRVMSTVWTAKWVNRQGKEQFGRETTTIDGQSYRVEPISPHNKSNSIYYYDSANQDEQRVIFDDKLMYRGDIDAMNFNTPWRAFLNVNTYFPAVRLSWDQRVGYTAGYKGYTTSACNGDPSFVGGATEYFPTQYDDFISYDWRFSYSQPKPIVIYKPGRQFWLGVAYTW | |||||||||||||
8 | 3rbhA | 0.09 | 0.06 | 2.33 | 1.38 | HHsearch | ------------KNFGLDVKITGESENDRDLGT--------A-PG------GTLNDIGIDLRP-WAFGQ-WGDWSAYF-GQAVAAT--DTIET---DTL-------PDKSYLAAREFWV--DYAGLYPGEHLRFGRQRLREDSGQWQD------T-------------------NIEALNWSFET-TLLNAHAGVAQRFS--EYRTDLD---------------------------------------------EL----APEDKDRTHVFGDISTQWAP-HHRIGVRIHHADDSGHLRR--PGEEV--------------------D-NLDK----TYTGQLTWLGIEATGDAYSPLNYWASATWLTGDRDNLTRIA--------------------------TGKQSGDVNAFGVDLGLRWNIDE-----QWKAGVGYA--RGSGGGKDGEEQFQQTGLESN-RS---NFT----------GTSRVHRF----GEAFRGELSNLQAATLFGSWQLR---EDYDASLVYFWRVDDDSDIGTSALQPGEKDQELDLVVTKYFKPSALIRFRGGLFKPGDGPGTDSTHRAFVDFIWR- | |||||||||||||
9 | 3v89A | 0.09 | 0.08 | 3.22 | 1.67 | PROSPECTOR2 | RIAVVEQGRGASSGYSIGMDVSQIQSYTAQAALGGTRTAGSSGAINEDVIGEGRQWGNRGLTQSIALAGRIGGAEALLIHTGRRAGEIRAHEDAGRGVQSFNRLVPVEDSSNYAYFIVKEECKNKANPKKDVVGKDERQTVSTRDYTGPN-------------RFLADPLSYESRSWLFRPGFRFENKIGGILEHTQQTFDTRDMTVPAFLTKAVFDANKKQAGSLPGNGKYAGNHKYGGLFTNGENGALVGAEYGTGVFYDETHTKSRYGLEYVYTNADKDARLSYDRQGVGLDNHFQQTHCSADGSDKYCRPS---------ADKPFSYYKSDRVIYGESHRLLQAAFKKSFDRNLSVNLGFDRFGSNLRHQDYYYQHANRAYSSNTPPQNNGKKISPNGSETSPYWVTIGRGNVVQICRLGNNTYTDCTPRSINGKSYRSTHSDDGSVSTGTHRTGWRAGVQSKAVKEAQIKDGKEEAKGDPAYDIKKRADRTDIQSHLFDAIQPSRYVVGLGYDQPEGKWGVNGMLTYSKAKEITELLGSRALLNGNSRNTKATARRTRPWYIVDVSGYQTAGGAVNQHKNVGNYTFSLEMKF | |||||||||||||
10 | 3rbhA | 0.10 | 0.06 | 2.24 | 0.55 | SAM | ------------------------------------------DRDLGTAPGGTLNDIGIDLRP-WAFGQ-WGDWSAYF-GQAVAATDTIETDT----------------SYLAAREFWVDYAGLTAYPGEHLRFGRQRLREDSGQWQD--------------------------NIEALNWSFET-TLLNAHAGVAQRFSEYRTDLDE----------------------------------------------------APEDKDRTHVFGDISTQWAP-HHRIGVRIHHADDSGHLRRPGEE---------------------------VDNLDKTYTGQLTWLGIEATGDAYSPLNYWASATWLTGDRDNLTRIA--------------------------TGKQSGDVNAFGVDLGLRWNIDE-----QWKAGVGYARGSGGG--KDGEEQFQQTG-------------------------------ESNRSNFTGTSRVHRFGEAFRGELQAATLFGSWQLREDYDASLVYHKFWRVDQPGEKDIGQELDLVVTKYFKPSALIRFRGGLFKP-DGPGTDSTHRAFVDFIWRF | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |