Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280
| | | | | | | | | | | | | | |
| Seq | MNEEEQFVSIDLNDDNICSVCKLGTDKETLSFCHVCFELNIDGIPKSDLLHTKSLRGHKDCFEKYHLIANQDCPRSKLSKSTYEEVKTILSKKINWIVQYAQNKDLDSDSECSKNPQHHLFNFRHKPDKKLLPQFDSQVPKYSAKWIEGNAGGLSNCTQRMLEQRENTDFGLAVLQDSGTTLCHNSVLWPHSHNREQKKEKTISGPEAHVQTQHPHYSREELNSMTLGEVKQLNAELQQQIQEVFEELTHQVQEKDSLASELHVRHVAIEQLLKNYSKLPCLQMGRTGLKS |
1 | 2tmaA | 0.08 | 0.08 | 3.07 | 1.36 | Neff-PPAS | | --KLDKENALDRAEQAEADKKAAEDRSKQL-------EDELVSLQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKM-----EIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHA------LNDMTS |
2 | 3snhA1 | 0.08 | 0.07 | 2.87 | 1.00 | PROSPECTOR2 | | MEDQDAFSAIGQNADLDLGRDFLPRGSGTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTKGISPVPINLRVYKPDIEFQIRDMLMQFVTKENCANSDLANSDALKVAKEVDPQGQRTIGKLDLMDEGTDARDVLENKLLP--------------------LRRGYIGVVNRSQKDIDGKKDITAALAAERLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEREESAEQAQRRDEMLRMYHALKE----ALSIIGDIN |
3 | 6e5oY | 0.12 | 0.11 | 3.80 | 0.80 | SPARKS-K | | CNVAEHEKLILLAQLKP-VKDSDEAVTYSLG------KFGQRALDFYSIHVTKE----------------STHPVKPLSGPVGKALSDACMGTIASFLSKYQDIIIEHQKKGNQKRLESLRENLEYPSVTLPPQPHTKVDAYNENLWQKLDDAKPGFPSPVVRRENEVDWWINEVKKLIDAKRDMRVFWSGEKRNTILEGYNPNENDHKKRENPKKPAKRQFGDLLLYLEKKVFDEAWERIDKKIAGLTSHIEREEARNAEDAQSKAVLTDWLRAKASFVLERLKEMDEKE |
4 | 2q0oD | 0.14 | 0.03 | 1.18 | 0.70 | FFAS-3D | | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EARYSVMTKSELEALAVSAIRE-HRRLLWADQAVYEEWLRASDEYVARQKRSEAQQEELSDILDALGFVPDVPF------- |
5 | 2pffA1 | 0.14 | 0.09 | 2.92 | 0.31 | HHpred | | -------LGWDL-DAIIPFAAELEHIDSKSEFAHRIMLTNILRMM----GCVKKQKSARGIETRSKLSLNRWHSESWANQLT------------------------VCGAIIGWTRGTGLMSAN-----NIIAE---GIEKMG-VRTFS--QKEMAFNLLGL--LTPEVVELCQKSPVMADL----------NGGLQ----------------FVPE-LKEFTAKLRKELVETSEVRKAVSIETALEHKV-VN-------------------------------------- |
6 | 3tnfB | 0.15 | 0.13 | 4.42 | 0.80 | MUSTER | | LDEYEQ--AIKRAQENI--------KGEEL-------EKKLDKLERQGKDLEDKYKTYEENLEGFEKLLTD---SEELSLSEINEKMEAFSKDSEKLTQLMEKHKGDEKTVQSLQREHHDIKAKLANLQVLHDAHTGKKSYVNEK---GNPVSSLKDAHLAINKDQE------VVEHEGQFYLLQKGQWDAIKNNPAALEKAQKDYSQSKHDLATIKMEALIHKL-SLEMEKQLETINNLIMSTDPKENEEATKLLHKHNGLNLKLANLQDMLAVHRKEKSF-FNEKGEEV |
7 | 4tqlA | 0.13 | 0.08 | 2.64 | 0.59 | CNFpred | | -----------------------------------------------------------EVKQEVEKAIE-----------EMKKLYDEAKKKIEQMIQQIKQGGDKQKMEEL--------------------------LKRAKEEMKKVKDKMEKLLEKLKQIMQEAKQKMEKLLK------QLKEEMKKMKEKMEKLLKEMKQRMEEVKKKMD---DELLEKINIDDLKKIAEDLIKKAEENIKEAKKIAEQLVKRAKQLIEAKQVAEELIKKILQL------------ |
8 | 2pffA1 | 0.19 | 0.13 | 4.31 | 0.51 | HHsearch-2 | | QDVEALIEFIYDTEKNGG----LGWDLDAIIPFAAIPEQGIE------LEHSKSEFAHRIMKQKSARGIETRPAQVSPNHGMYSESKLSLETLFNRW--HS----------ESWANQLTVCGA----------------------IIGWRGTGLMSANNIIAEGIE------------------KMGVRTFSQKEM-AFNLLLLTPEVVELCQKSPVADLNGGLQFVPELKEFTAKLRKELVETSEVRKAVSIETA----L--EHKVVNG----N---------------- |
9 | 5nnvA | 0.09 | 0.07 | 2.64 | 1.29 | Neff-PPAS | | --------------------------------------------KEEELAESSAISAKEAKIEDTRDKIQALDESVDELQQVLLVTSEELEKLEGRKEVLKERKKNAVQNQEQLEEAIVQFQQKETVLKEELSKQEAVFETLQAEVKQLRAQVKEKQQ---------LSNELTELKIAAAKKEQACKGEEDNLARLKKELTETELALKEAKEDLSFLTSESSSTSGEEKLEEAAKHKLNDKTKTIELIALRRDQRIKLQHGLDTYERELKEKRLYKQKTTLL--------- |
10 | 6f1tX2 | 0.13 | 0.03 | 1.07 | 0.53 | HHsearch | | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QHIIRLESLQAEIKMLSDRKRELEHRLSATLEENDLLQGTVEELQDRVLILERQGHDKDLQ-LHQSQLE- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|