Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200
| | | | | | | | | | |
| Seq | KKSRKDRCERVVEAIEGLVGAKNLDRFLTDFVHFIAASEKFSFALALSPWDSFFCTIRWKLSNKFIKEFKDYLNSKLGFDVFSSRQEIDKIRKNHAPLDDYNINIETTTRCTRKGFEAKVPMAVVSAKNVKNLVERRFQSLQNNSRLQFEYDDEVALGFGGDKGADVTKLCIVFQNIASPNNPHGILLVGYYTGDDNYANLKSKMRTVFEQVNNIKSI |
1 | 4wwxB1 | 0.12 | 0.12 | 4.19 | 1.06 | FFAS-3D | | RRAQKHRLRELKIQVKEFADKEELTLFLADELEAIMQGRGSG----LQPAVCLAIRVNTFLSCSQYHKMYRTVKAITGRQIFQPLHALRNAEKVLLPG-YHPFEWQPPLKNVSSRTAKRFRYDSALVSALMDMEEDILEGMRSQD-LDDYLNGPFTVVVMGDVSEKAVRFSFTVMRIPKPNSELCCKPLCLMLADESHETLTAILSPLIAEREAMKS- |
2 | 6b40A | 0.13 | 0.11 | 3.63 | 1.10 | HHpred | | --------------------------------------------SCMTPEECLGMRLDMLMTKNQYSKEYNILKER-GFSTLCPPKQLDAIEKTLMPGARYSLEPDSTMDFHEYVPDFPPNT-KGVRFPYAHAVAKTLEELEDNG-LKRDPNIHTICKDGADGMGDVLRFSFCVLRCPNPNSVRSNRPVLECGDENDDGTVAVCVGPIECQRLLMKDK |
3 | 6b40A | 0.13 | 0.11 | 3.64 | 1.57 | HHsearch-2 | | --------------------------------------------SCMTPEECLGMRLDMLMTKNQYSKEYNILKER-GFSTLCPPKQLDAIEKTLMPGTRYSLEPDSTMDFHEYVPDFPCPNTKGVRFPYAHAVAKTLEELEDENGLKRDPNIHTICKDGADGMGDVLRFSFCVLRDPNPNSVRSNRPVLECIDENDDGTVAVCVGPIECQRLLMKDK |
4 | 6b40A | 0.13 | 0.10 | 3.51 | 2.39 | HHsearch | | --------------------------------------------SCMTPEECLGMRLDMLMTKNQYSKEYNILKER-GFSTLCPPKQLDAIEKTLMPGTRYSLEPDSTMDFHEYVPDFPPNT-KGVRFPYAHAVAKTLEELEDENGLKRDPNIHTICKDGADGMGDVLRFSFCVLRCPNPNSVRSNRPVLECGDENDDGTVAVCVGPIECQRLLMKD- |
5 | 4wwxB | 0.12 | 0.12 | 4.21 | 1.24 | HHsearch-2 | | RRAQKHRLRELKIQVKEFAEGGDVKAVLTLFLLRARNEHRQGRGSGLQPAVCLAIRVNTFLSCSQYHKMYRTVKAITGRQIFQPLHALRNAEKVLLPGYPFEW--QPPL-KNVDGLEYPVDTIAKRVSALMDMEEDILEGMRSQDLDDYLNGFTVVVKESCDGMGDSVRFSFTVFEEPKPNSELCCKPLCLMLADSDHETLTAILSPLIAEREAMKSS |
6 | 4wwxB1 | 0.12 | 0.12 | 4.20 | 1.60 | HHsearch | | RRAQKHRLRELKIQVKEFAEGGDVKAFLLA-LRARNEHRQQGRGSGLQPAVCLAIRVNTFLSCSQYHKMYRTVKAITGRQIFQPLHALRNAEKVLLPGYPFEWQ--PPL-KNVSGLEYPVDTIAKRFRALMDMEEDILEGMRSQDLDDYLNGFTVVVKESCDGMGDVVRFSFKVFEEPKPNSELCCKPLCLMLADSDHETLTAILSPLIAEREAMKS- |
7 | 4wwxB1 | 0.12 | 0.12 | 4.21 | 1.03 | HHsearch-2 | | RRAQKHRLRELKIQVKEFAEGGDVKATLFLALRARNEHRQQGRGSGLQPAVCLAIRVNTFLSCSQYHKMYRTVKAITGRQIFQPLHALRNAEKVLLPGYPFEWQ--PPL-KNVSGLEYPVDTIAKRFSALMDMEEDILEGMRSQDLDDYLNGFTVVVKESCDGMGDVVRFSIKVFEEPKPNSELCCKPLCLMLADSDHETLTAILSPLIAEREAMKSS |
8 | 4wwxB | 0.12 | 0.11 | 4.06 | 1.60 | HHsearch | | RRAQKHRLRELKIQVKEFAEGGDVKAFLLALLEAIMQ-G---RGSGLQPAVCLAIRVNTFLSCSQYHKMYRTVKAITGRQIFQPLHALRNAEKVLLPGYPFEW--QPPL-KNVDGLSYPVDTIAKRVSALMDMEEDILEGMRSQDLDDYLNGFTVVVKESCDGMGDSVRFSFTVFEEPKPNSELCCKPLCLMLADSDHETLTAILSPLIAEREAMKS- |
9 | 4wwxB | 0.12 | 0.11 | 4.08 | 0.81 | SPARKS-K | | RRAQKHRLRELKIQVKEFADKEELLALRAQADELEAIMQGRGSG--LQPAVCLAIRVNTFLSCSQYHKMYRTVKAITGRQIFQPLHALRNAEKVLLPGYHFEWQIIDGLASSVDEYPVDTIAKRFRVSALMDMEEDILEGMRSQD-LDDYLNGTVVVKESCDGMGDAVRFSFTVMRIPKPNSELCCKPLCLMLADEDHETLTAILSPLIAEREAMKSS |
10 | 4wwxB | 0.13 | 0.12 | 4.31 | 0.92 | FFAS-3D | | RRAQKHRLRELKIQVKEFADKEELTLFLADELEAIMQGRGSG----LQPAVCLAIRVNTFLSCSQYHKMYRTVKAITGRQIFQPLHALRNAEKVLLPG-YHPFEWQPPLKNVSSRTDVGITIAKRFVSALMDMEEDILEGMRSQD-LDDYLNGPFTVVVMGDVSEKAVRFSFTVMRIPKPNSELCCKPLCLMLADESHETLTAILSPLIAEREAMKS- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|