Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200
| | | | | | | | | | |
| Seq | LGILLAIVGGFLDAYTYISRGEVFANAQTGNIVLLGLNIAEGNFKNSIYYLIPILSFALGVVISEVIKSKYKDSNHIHWRQIIIVIEIIILFIVGFVPSGNMNVIVNVAISFVCSMQVESFRKVHGNAFATTMCTGNLRSGTEQLYKYKKTKDKSMLHRTLQYYGIILFFILGAAIGALVTKLFNEKSVLFCCIILLVAFA |
1 | 6gs1A | 0.11 | 0.09 | 3.43 | 1.06 | SPARKS-K | | --------FKQPKAFYLIFSIELWERGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDK-VLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMAAIAVGNGLFK-------ANP---------SSLLSTCYEKNPRLDGAFTMYYMSVNIGSFFSMIATPWLAAKYGSVAFALSVVGLLITIV |
2 | 1pw4A2 | 0.10 | 0.08 | 3.12 | 1.12 | FFAS-3D | | --LWYIAIANVFVYLLRYGI-----------LDWSPTYLKEVKDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNR--GATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGF----------------LIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSIL-- |
3 | 5gpjA | 0.06 | 0.05 | 2.41 | 1.11 | CNFpred | | LATAIFSTVSFLLGGVTSLVSGFLGMKIATYANARTTLEARKGVGKAFITAFRSGAVMGFLLAANGLLVLY----IAINLFKIYYGDDWGGLFEAITGYGLGGSSMALFGRVGGGIYTKAADVGADDPRNPAVIADNVGDNVGDIA----------GMGSDLFGSYAESSCAALVVASISSFGHELTAMLYPLIVSSVGIL |
4 | 4zowA2 | 0.10 | 0.08 | 2.98 | 1.03 | SPARKS-K | | RFVAGALALGFVSLPLLAWIAQSIIIT-------------GEQLSSYEYGLLQVPIFGALIAGNLLLARLTSRRTVRSLIIMGGWPIMIGLLVAAAATVISSHTAGLSIYAFGIGLANAGLVRLTLFAS----------------------DMSKGTVSAAMGMLQMLIFTVGIEISKHAWLNGGGLFNLFNLVNGILWLS |
5 | 6gs1A1 | 0.10 | 0.08 | 3.12 | 1.11 | FFAS-3D | | -AFYLIFSIELWERFGYY-----------GLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVWSGHDAGIVYMGMAAIAVG-------------------NGLFKANPSSLLSTCYEKNDPRLDGAMYYMSVNIGSFFSMIATPWLAAKYGWSAFALSVVGLLITI- |
6 | 5aymA | 0.08 | 0.07 | 2.72 | 0.29 | HHpred | | ---------------TQLLL-GRLLTRSGDQAWDFVLVIFPGKLQVAFYYLIVKIGTFLLTPSSGKWIDTHPR---IQVVKWGVWLQFFAILAGMVFDRESWLLSVLFIALALSGVMASLGSQI-----TDIS---VGNDLA---PSLV-APEKLTHFNSWLRRIDLATEVGAPILAGALFPLAGLFLIGWNLVSFVPEY- |
7 | 3wdoA | 0.11 | 0.09 | 3.44 | 0.93 | MUSTER | | FSKVLAEPRLLKLNFGIM----CLHMLLMSTFVALPGQLADAGFPAAEHWKVYLATMLIAFGSVVPFIIYAEVKRKMKQVFVFCVGLIVVAEIVLWNAQTQFWQLVVGVQLFFVAFNLMEALLP-----------SLISKES--------PAGYKGTAMGVYSTSQFLGVAIGGSLGGWIDGMFDQGVFLAGAMLAAVWLA |
8 | 3rkoB | 0.09 | 0.08 | 3.20 | 1.04 | CNFpred | | MWATLMLLGGAVGKSAQLPLQTWLADAMAGPTPVSALIHA-----ATMVTAGVYLIARTHGLFLMT----------PEVLHLVGIVGAVTLLLAGFAALVLAYSTMSQIGYMFLALGVQAWDAAIFHLMTHAFFKALLFLASGSVILACH-SIPLVYLCFLVGGAALSALTAGFFSKDEILAGAMMVAGLVGAFMTSLYTF |
9 | 4ldsA | 0.16 | 0.15 | 4.96 | 0.80 | HHsearch-2 | | LIFILGALGGLLYGYDNGVISGALL--------FIHKDIPLNSTTEGIVVSSMLIGAIVGAGSSGPLADKLGR----RRLVLIAIVFIIGALILAYLSEEIEGWRWMLGLAVVPSVILLVGI-YFMPESPRWLLENRNEEAARQVMKITYDKSPW-LGRILIVGCIGTINVLVTIVAIFVVDKIDRKKLLVGLSLFIVFFG |
10 | 3o7pA2 | 0.13 | 0.11 | 3.82 | 1.00 | Neff-PPAS | | FSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIGFAANYLTGTMVCFFIGRFTGTWLISRF----APHKVLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNL-----------------------GQDTKYGSSFIVMTIIGGGIVTPVMGFVSDAAGPTAELIPALCFAVIFI |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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