>PF06898 (378 residues) YIFGYLEIKVEGYFIEKFINNCLKSNIFLWNIKRKRTTIMTCNIGVKDFKNIRKILKQTK CRIKIEKKKGLPFTFNKYRKRKIFALLIFIILIIIAILSNFVWNIQIEGTEKISKDELIQ TLKEEGLSIGKFKPGIETREIINKVRLDRDDIAWIGIEITGTNAIVKVVEAEEKPEIVDE DEYCNIVATKDGVVTKIMAQNGTPLVKNGDLIKKGTVLIGGWLEGKYTGTRYVHSNGQVE AKVWYTQKERVYLKETKKEDTGEAQNKYSVNINNFIINFNKRVSKFENYDTIEEAKKIKL FSNFYLPIELVKTTYKEYKVVEIVHTLEEAKTIGIERAKDKLNAQIENTSNITDEQINIK EGTNFIDVEVVYEVKENI |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | YIFGYLEIKVEGYFIEKFINNCLKSNIFLWNIKRKRTTIMTCNIGVKDFKNIRKILKQTKCRIKIEKKKGLPFTFNKYRKRKIFALLIFIILIIIAILSNFVWNIQIEGTEKISKDELIQTLKEEGLSIGKFKPGIETREIINKVRLDRDDIAWIGIEITGTNAIVKVVEAEEKPEIVDEDEYCNIVATKDGVVTKIMAQNGTPLVKNGDLIKKGTVLIGGWLEGKYTGTRYVHSNGQVEAKVWYTQKERVYLKETKKEDTGEAQNKYSVNINNFIINFNKRVSKFENYDTIEEAKKIKLFSNFYLPIELVKTTYKEYKVVEIVHTLEEAKTIGIERAKDKLNAQIENTSNITDEQINIKEGTNFIDVEVVYEVKENI | |||||||||||||||||||
1 | 4indA | 0.12 | 0.08 | 2.88 | 0.78 | SPARKS-K | KVKYYYKLS-EKQDLDAFVNS-----IFVGSISYLLTKIVSAPVVP----------LGPNASIIIDDQEG-----------------------------LYLIRIKVYNTNS---------------------FSVTVTFFN-----NNNTMT-YSIGASEFEIYDIFTKE--------QGNIYYIQLPPGLAILEFSLERV---FEKGNR-----INIPKIIHTSGNGYISFRLRGTYAIKMPYSYNATIPLVISSIPANGSGTFLVYLKITG-------------DYEDVKFSVTYGGGLGVPFTFGLEVEEITNFVTQSVTLS----------------------GSQVTQSILNV--QGSGSHLRLKYASVSGL | |||||||||||||
2 | 2vh1A | 0.09 | 0.05 | 1.81 | 0.68 | FFAS-3D | -------------------------------------------------------------------------------------------------------KLVLTGERHYTRNDDIRQSI-LALGEPGTFMTQDVNIIQTQIEQRLPWIKQVSVRKQWDELKIHLVEYV-----------PIARWNDQHMVD----AEGNTFSVPPERTSKQVLMLYGPEGSANEVLQGYRE--------MGQMLAKDRFTLKEAAMTARRSWQLTLN-NDIKLNLGRG-------------------------------------------DTMKRLARFVELYPVLQQQAQTDGKRISYVDLRY---DSGAAVGWA------- | |||||||||||||
3 | 4qshA | 0.15 | 0.09 | 3.02 | 0.63 | HHpred | ----------------HYWEDVRHYYKDFNALNSPQTEVYIHEMPGGQYTNLQQQAIAVGLG------DRWDEVKEMYTVVNSKVVGDLALFMVQNELSEDVYEIDFMGQGGFPEKLQKLVLKGRTDRPGALMEPVNFVEVKAELKEKADGTRVIYFELNGQPREINIQDMNVQARKIDTTNPEHVGATMTGSVIQV-------VVKKGDSVKKGDPLLITEAM-KMETTIQAPFDGEVSSIYVSD---------GDTIESGD------------------------------------------------------------------------------------------------------------------- | |||||||||||||
4 | 4uicA | 0.11 | 0.11 | 3.89 | 0.77 | MUSTER | YET-YVF-PKSGEARVATYIDAYNYATKLDKMRQELKAAVDLKKAEELYHKISYELKTRTVILDRVYGQSRELLRSTFKADAQALRDRLIYDITVAMKAREAQDAVKAGNLDKAKAALDQVNQYVSKVTDAFKAELQAAQDAKAAYEAALTPKVESVSAIDST-SFKVTFTKPVDKATAIPKNFSITLKGTEYPKSVEVSSGTATVTLYDTLVDGTVVTSGLKDTAGKEFETSTNEFTYNKPV----PASITFNFNKLPEDSAVDLVTVKDAAGNVIK-SGFELEFTSSEKLTQGKFINTTGKKSVIVNATVTNVTTGNVILAVEDEKAAEVSELKLTKD------NKEVVTLYANGNAFDKDGNQILTLTAKFKDQY | |||||||||||||
5 | 4c00A | 0.09 | 0.08 | 2.98 | 0.73 | CNFpred | VLIGGTDVVLRGGRTDKDYLKLL-------DTRPAIGTVLNQGDYENFKKSLTSIALRK-SEFTKAQLGIA--------------HKAFWDIDYNSGERYRFGHVTFEGSQ-IRDEYLQNLV---PFKEGDEYESKDLAELNRRLSAT---GWFNSVVVAPLPLTGVVSPRTENTIE-----TGVGYSTDVGPRVKATWKKPHSLTTSTSISAPEQTLDFSYKMPNPLEQYYLVQGGFKRTDLNDTESDSTTLVASRYWDLSGWQRAINLRWSLDHFTQG----------EITNTTMLFYP---GVMISRTRSWGDSQRYSIDYSNT-------------AWGSDVDFSVFQAQNVWIRTLYDRHRFVTRGTLGWIET | |||||||||||||
6 | 2vh1A1 | 0.12 | 0.02 | 0.75 | 0.53 | HHsearch-2 | ------------------------------------------------------------------------------------------------------SKLVLTGERHTRNDDIRQSILALGE--PGTFMTQDVNIIQTQIEQRLPWIKQVSVRKQWDELKIHLVEY--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
7 | 3nksA | 0.08 | 0.07 | 2.85 | 0.90 | Neff-PPAS | --LGPRGIRPAGALGARTLLLVSELGLDSEVLPVRGDHPAAQNRFLYVGGALHALPTGLRGPSPPFSKPLFWAGLRELTKQRRLGPEVASLAMDSLCRGVFAGNSRELSIRSCFPSLFQAEQTHRSILLGLLLGQPDSALIRQALAERWSQWSLRG----GLEMLPQALETHLTSRG--------VSVLRGQPVCGLSLQAGRWKVSLRDSSLEADHVISAIPASVARALSAITAVSVAVVNLQYQG-AHLPVQGFGHLVPSSEDPGVLGIVYDSVAF----------------PEQDGSPPGLRVTVMLGGSWLQTLEASGCVLSQELFQQRAQEAAATQLGLKEMPSHCLVHLHKNCIPQYTLGHWQKLESARQFL | |||||||||||||
8 | 2vh1A1 | 0.12 | 0.02 | 0.75 | 0.62 | HHsearch | ------------------------------------------------------------------------------------------------------SKLVLTGERHTRNDDIRQSILALGE--PGTFMTQDVNIIQTQIEQRLPWIKQVSVRKQWDELKIHLVEY--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
9 | 2vh1A | 0.11 | 0.06 | 2.03 | 0.94 | SP3 | --------------------------------------------------------------------------------------------------S----KLVLTGERHTRNDDIRQSILAL--GEPGTFMTQDVNIIQTQIEQRLPWIKQVSVRKQD-ELKIHLVEYVPI-----------ARWNDQHMVDA----EGNTFSVPPERTSKQVLP---MLYGPEGSANEVLQGYREMGQMLAKDRFTL--KEAAMTARRS----WQLTLNDIKLNLGRG-------------------------------------------DTMKRLARFVELYPVLQQQAQTDGKRISYVDLRYD---SGAAVGWAPLP---- | |||||||||||||
10 | 5m86A | 0.11 | 0.08 | 2.87 | 0.98 | PROSPECTOR2 | VLQDISQAILAGRFHNDLTVINEKYDLFYLLPTINEKKIVSFYIPERHREEIESVLNKFNPVIK-----------------------------------NGIWKIYLDTESFKLSEPFSTFFGIDSIVFDGSKGGEDKDALVNSIIDSAGYGENIYLRYIGQNYKLTLSIDNPHVHGIFAETK-----KNIAWRRES----------KAPHKDNTEDYIYALDDTHTIPDILIDTAYTGEKGTVYIGKH-------------SNYDIYRAFFGDALTNHSSVISEN------------------VYYLRRWSKYEDGKLFLYFYTTVDFLRLIP--AILDSTRKNFPKVNKIDE--------------------ITPA | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |