Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220
| | | | | | | | | | | |
| Seq | IVVVFDFDKTIVDVDSDNWVIDELGFTDLFNQLLPTMPWNSLMDRMMMELHSHGKTIEEIEEVLCRIPLHSRVIPAIKAAHALGCDLRIVSDANMFFIETILKHLGIREYFSEINTNPGYVNEEGRLRILPYHDFNKVSHGCSLCPPNMCKGSIIDRIQDSISQDDKKRFIYLGDGSGDYCPSLRLKEKDFMMPRKNFPVWDLICKDPLLVKAEIHGWSDGEELEQILLHLI |
1 | 1rkvA | 0.14 | 0.12 | 4.11 | 1.54 | SPARKS-K | | EIACLDLEGVLVP-EIWIAFAEKTGIDALKATTRDIPDYDVLMKQRLRILDEHGLKLGDIQEVIATLKPLEGAVEFVDWLRER-FQVVILSDTFYEFSQPLMRQLGFPT----LLCHKLEIDDSDRVVGYQLR-------------QKDPKRQSVIAFKSL-----YYRVIAAGDSYNDTTMLSEAH-AGILFHAP-----ENVIREFP----QFPAVHTYEDLKREFLKAS |
2 | 2feaA | 0.17 | 0.15 | 4.96 | 1.86 | FFAS-3D | | -FIICDFDGTITNDNIINIKTFAPPEWALKDGVLSKTL--SIKEGVGRFGLLPSSLKEEITSVLEDAKIREGFREFVAFINEHEIPFYVISGGDFFVYPLLEGIVEKDR----IYCNHASFDNDYIHIDWPHSCKGTCSNQC-----GCCKPSVIHEL------SEPNQYIIIGDSVTDVEAA---KLSDLCFARDY--LLNECREQNLN----HLPYQDFYEIRKEIENVK |
3 | 1rkvA | 0.16 | 0.14 | 4.58 | 2.33 | HHpred | | EIACLDLEGVLVP-EIWIAFAEKTGIDALKATTRDIPDYDVLMKQRLRILDEHGLKLGDIQEVIATLKPLEGAVEFVDWLRER-FQVVILSDTFYEFSQPLMRQLGFP----TLLCHKLEIDDSDRVV--GYQL---------RQK--DPKRQSVIAFKSL-----YYRVIAAGDSYNDT-TMLSEAHAGILFH-A---PENVIREFPQ---FPAV--HTYEDLKREFLKAS |
4 | 1rkvA | 0.15 | 0.13 | 4.34 | 1.52 | MUSTER | | EIACLDLEGVLVP-EIWIAFAEKTGIDALKATTRDIPDYDVLMKQRLRILDEHGLKLGDIQEVIATLKPLEGAVEFVDWLRER-FQVVILSDTFYEFSQPLMRQLGFPT----LLCHKLEIDDSDRVVGYQL-------------RQKDPKRQSVIAFKSL------YRVIAAGDSYNDTTMLSEAH-AGILFHAP----ENVIREFPQ-----FPAVHTYEDLKREFLKAS |
5 | 1f5sA | 0.19 | 0.16 | 5.28 | 1.44 | CNFpred | | KLILFDFDSTLVNNETIDEIAREAGVEEEVKKITKELNFEQSLRKRVSLLK--DLPIEKVEKAIKRITPTEGAEETIKELKNRGYVVAVVSGGFDIAVNKIKEKLGLDYAFANRLIVK-----DGKLTGDVEGE----------VLKENAKGEILEKIAKIEGIN-LEDTVAVGDGANDISMFKKAGLKIAFCA------KPILKEK-----ADICIERDLREILKYIK--- |
6 | 4ex6A | 0.13 | 0.11 | 3.88 | 0.55 | HHsearch-2 | | RGVILDLDGTLADTPAAAEVLAAMGTAVSRGAITVGRPLPASLAGLLGVVE--DPRVAEATERFGPRLLYPGVLEGLDRLSAAGFRLAMATSKVEKAARAIAELTGLDTRLTVIAGDDS----VERGK----------PHP-----------DMALHVARGLGI-PPERCVVIGDGVPDAEMGRAAGMTVIGVSYGVSGPDE-LMR-----AGADTVVDSFPAAVTAVLDG- |
7 | 1l7nB | 0.18 | 0.16 | 5.17 | 1.72 | Neff-PPAS | | -LILFDFDSTLVNNETIDEIAREAGVEEEVKKITKEAEGKLNFEQSLRKRVSLDLPIEKVEKAIKRITPTEGAEETIKELKNRGYVVAVVSGGFDIAVNKIKEKLGL----DYAFANRLIVK-DGKLTGDVEGE----------VLKENAKGEILEKIAKIEG-INLEDTVAVGDGANDIS--FKKAGLKIAFCAK-----PILKEKAD----ICIEKRDLREILKYIK--- |
8 | 4ex6A | 0.13 | 0.11 | 3.76 | 0.90 | HHsearch | | RGVILDLDGTLADTPAAAEVLAAMGTAVSRGAITVGRPLPASLAGLLGVVE--DPRVAEATRRFGPRLLYPGVLEGLDRLSAAGFRLAMATSKVEKAARAIAELTGLDTRLTVIAGDD----SVERGK----------PHP-----------DMALHVARGLGI-PPERCVVIGDGVPDAEMGRAAGMTVIGVSYGVSGPDE-LMR-----AGADTVVDSFPAAVTAVLDG- |
9 | 2no4A | 0.13 | 0.11 | 3.76 | 1.67 | PROSPECTOR2 | | RACVFDAYGTLLDVHSASMLWRQRQLEYSWTRTLMHQYWQLTDEALTFALRTYHLEKDRLMSAYKELSAYPDAAETLEKLKSAGYIVAILSNGNDEMLQAALKASKLDRVLDSCLSADD-------------------------LKIYKPDPRIYQFACDRLGV-NPNEVCFVSSNAWDLGGAGKFGFNTVRINRQGNP-------PEYEFAPLKHQVNSLSELWPLLAK-- |
10 | 3um9A | 0.17 | 0.14 | 4.56 | 1.75 | SAM | | KAVVFDLYGTLYDVYSVERIFPGQGEMQLEYTWMRTLMGLDALRYTCGSLG-LADGEAHLCSEYLSLTPFADVPQALQQLRAAGLKTAILSNGSRHSIRQVVGNSGLTNSFDHLISVD----EVRLFK----------PHQ-----------KVYELAMDTLHL-GESEILFVSCNSWDATGAKYFGYPVCWINRSNGVFD--------LGVVPDIVVSDVGVLASRF---- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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