>PF06808 (403 residues) IVVFALTMTLGVPIAFCLGLAGLSFIVLSGTVPIAVLPTLMFGGMDSFPLLAIPFFIIAG DLMQRCGVLPKLIEFANSLVGHLRGGLAYVVVLTSMLFAGVTGVALAECAAIGSMLAPAM VRQGYPGGFVSSVIAGSAVMGPIIPPSVAMLIYAYVYGGGISVGKLFLMGVVPGVLVAVA LMALVWVTARQRHFPKSDTKFSLGRVVRSLRGALLGLVVPVIILGGILGGVFTATEAGAV AALYAVLIGVFVLRTLGPRELGQSLLVGAKTSAIIYLLLGTSNVVSWILVRHQVPKIVAQ WSLELTDSATVFIIVTIAVLFLLGLALEAVPIMIMLIPVLAPAAAAYRIDPHHLGLIIVM TVQTALLSPPVALSLYVVATVIRCPMREANREVWKFVAAVLAI |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | IVVFALTMTLGVPIAFCLGLAGLSFIVLSGTVPIAVLPTLMFGGMDSFPLLAIPFFIIAGDLMQRCGVLPKLIEFANSLVGHLRGGLAYVVVLTSMLFAGVTGVALAECAAIGSMLAPAMVRQGYPGGFVSSVIAGSAVMGPIIPPSVAMLIYAYVYGGGISVGKLFLMGVVPGVLVAVALMALVWVTARQRHFPKSDTKFSLGRVVRSLRGALLGLVVPVIILGGILGGVFTATEAGAVAALYAVLIGVFVLRTLGPRELGQSLLVGAKTSAIIYLLLGTSNVVSWILVRHQVPKIVAQWSLELTDSATVFIIVTIAVLFLLGLALEAVPIMIMLIPVLAPAAAAYRIDPHHLGLIIVMTVQTALLSPPVALSLYVVATVIRCPMREANREVWKFVAAVLAI | |||||||||||||||||||
1 | 4r0cA | 0.12 | 0.11 | 4.04 | 2.41 | SPARKS-K | ----------RLPFVWFCLLLLPLTAVLGALDVLRYLFTTLVGNFTGAPLGVVLVAMLGLGVAEQSGLLSVSLASLVRRSSGG---ALVFTVAFAGVLSSLTV--DAGYVVLIPLAGLVFQLAGRPPIAGIATAFAAVSGGFSPVDATLAGLSTEAAHRTVAATGNYWFIIASTFLVTGLVTLITRTLTEPRADASVDAPQIHSRAMKWTGLTLAILLAGLALLVLPPFIHGLVVIVALIAGICGAVYGRVSGQFRNSGAVITAMEVTMASMAGYLVLMFFAAQFVAWFNYSQLGLLLAVKGAAWLGAKVVLLLLFVVLTALINLMGSASAKWSILAPVFIPMLMLLGISPEASQAAYRVGDSSTNIITPLMPYFVLVLGFARTGIGTLIALMLPYSLTLLLG | |||||||||||||
2 | 4r0cA | 0.14 | 0.14 | 4.74 | 2.30 | FFAS-3D | TLLFVWFCLLLLPLTAVLGALDVTATHLLDADGLRYLFTTLVGNFTGFAPLGVVLVAMLGGVAEQSGLLSVSLA---SLVRRSSGGALVFTVAFAGVLSSLTVD--AGYVVLIPLAGLVFQLAGRPPIAGIATAFAAVSGGFSAPVDATLAGLSTEADPDRTVAATGNYWFIIASTFLVTGLVTLITRTLTEADASVDAPQIHSRAMKWTGLTLAILLAGLALLVLPNDAPLRVVIVALIAGICGAVYGRVSGQFRNSGAVITAMEVTMASMAGYLVLMFFAAQFVAWFNYSQLGLLLAAWLGALTVPKVVLLLLFVVLTALINLMISASAKWSILAPVFIPMLMLLGISPEASQAAYRVGDSSTNIITPLMPYFVLVLGFAETGIGTLIALMLPYSLTLLLG | |||||||||||||
3 | 4r0cA | 0.12 | 0.11 | 4.00 | 2.17 | HHpred | --------------------------LLDA-DGLRYLFTTLVGNFTGFLGVVLVAMLGLG-VAEQSGLLSVSLASLVRRSSGGA--LVFTVAFA-GVLSSLTVD--AGYVVLIPLAGLVFQLAGRPPIAGIATAFAAVSGGFSAVGPVDATLAAHIIDRTVAATGNYWFIIASTFLVTGLVTLITRTLTEPRAHNTVASVDAPQIHSRAMKWTGLTLAILLAGLALLVLPNGSPFIVALIAGICGAVYGR-VSGQRNSGAVITAMEVTMASMAGYLVLMFFAAQFVAWFNYSQLGLLLAVKGAAWLVPKVVLLLLFVVLTALINLMISASAKWSILAPVFIPMLMLLGISPEASQAAYRVGDSSTNIITPLMPYFVLVLGFARTGIGTLIALMLPYSLTLLLG | |||||||||||||
4 | 4r0cA | 0.13 | 0.13 | 4.47 | 1.72 | MUSTER | TLLFVWFCLLLLPLTAVLGALDVTATHLLDADGLRYLFTTLVGNFTGFPLGVVLVAMLGLGVAEQSGLLSVSLASLVRRSS---GGALVFTVAFAGVLSSLTV--DAGYVVLIPLAGLVFQLAGRPPIAGIATAFAAVSGGFLLVGPVDATLAGLSTERTVAATGNYWFIIASTFLVTGLVTLITRTLTEPRLAHADASVDAPQIHSRAMKWTGLTLAILLAGLALLPFIHGLVVIVALIAGICGAVYGRVSGQFRNSGAVITAMEVTMASMAGYLVLMFFAAQFVAWFNYSQLGLLLAVKGAAWTVPKVVLLLLFVVLTALINLMIGASAKWSILAPVFIPMLMLLGISPEASQAAYRVGDSSTNIITPLMPYFVLVLGFARTGIGTLIALMLPYSLTLLLG | |||||||||||||
5 | 5uldA | 0.14 | 0.13 | 4.58 | 2.17 | CNFpred | AFIAVLWLTEALHVTVTAILVPVMAVFFGI-----FETQAALNNFANSIIFLFLGGFALAAAMHHQGLDKVIADKVLAMAQGKMSVAVFMLFGVTALLSMWIS-NTATAAMMLPLVLGVLSKVDADYVFVLLGVAYSASIGGIATLVGTGPNAIAAAEVGLSFTDWMKFGLPTAMMMLPMAIAILYFLLKPTLNGMFELDRAPVNWGKVVTLGIFGLTVFLWIFSSPINA--FKSFDTLVALGAILMLSFAR--VVHWKEIQKTA------DWGILLLFGGGLCLSNVLKQTGTSVFLANALSDMVMGIFVVILVVATFVVFLTEFTSNVATTTLLIPVFATVAEAFGMSPVLLSVLIAVAASCAFMLPVATPPNAIVFASGHIKQSEMMRVGLYLNIACIGL | |||||||||||||
6 | 4f35D | 0.14 | 0.12 | 4.22 | 3.48 | HHsearch-2 | AFIAVLWLTEALHVTVTAILVPV-AVFFGI-FETQ----AALNNFANSIIFLFLGGFALAAA-HHQGLDKVIADKVLAAQGKS--VAVF-LFGVTALLS-WI-SNTATAA--LPLVLGVLSKVDADKQRLLGVAYSASIGGIATLVSPPNAIAAAEV--GLSFTDW-KFGLPTAL---PA-IAIL----YFLLVNWD----------KGKVVT---LGIFGLTVFLWIFSSPINAADTLVALGAI-LLS--FARVVHWKEIQKTADW------GVLLLFGGGLCLSNVLKQTGTSVFLANALSDVSHGIFVVILVVATFVVFLTEFASNTASAALLIPVFATVAEAFGS-PVLLSVLIAVAASCAF-LPVATPPNAIVFASGHIKQSE--RVGLYLNIACIGL | |||||||||||||
7 | 4r0cA | 0.12 | 0.12 | 4.13 | 2.24 | Neff-PPAS | -PTLLFVWFCLLLLPLTAVLGALDVTATHPLTGLRYLFTTLVGNFTGFAPLGVVLVAMLGGVAEQSGLLSVSLASLVRRS---SGGALVFTVAFAGVLSSLTV--DAGYVVLIPLAGLVFQLAGRPPIAGIATAFAAVSGGFLLVGPVDATLAGLSTEADPDRTVAATGNYWFIIASTFLVTGLVTLITRTLNTVADASVDAPQIHSRAMKWTGLTLAILLAGLALLVLPNGLVVIVALIAGICGAVYGRVSGQFRNSGAVITAMEVTMASMAGYLVLMFFAAQFVAWFNYSQLGLLLAVKGAAWLVPKVVLLLLFVVLTALINLMIGASAKWSILAPVFIPMLMLLGISPEASQAAYRVGDSSTNIITPLMPYFVLVLGFARTGIGTLIALMLPYSLTLLLG | |||||||||||||
8 | 4r0cA | 0.13 | 0.12 | 4.16 | 4.46 | HHsearch | ----------RLPPTLLCLLLLPLTAVLDA-DGLRYLFTTLVGNFTGAPLGVVLVAMLGLGVAEQSGLLSVSLASLVRRSSGGA--L-VFTVAFAGVLSSLTV--DAGYVVLIPLAGLVFQLAGRPPIAGIATAFAAVSGGFSALVDATLGLSTEAA--HIDATGNYWFIIASTFLVTGLVTLITRTLTEPRLAHANTVADASVIHSRAMKWTGLTLAILLAGLALLVDAPLRHPGLVLIAGICGAVYGR-VSGQRNSGAVITAMEVTMASMAGYLVLMFFAAQFVAWFNYSQLGLLLAVKGAAWLVPKVVLLLLFVVLTALINLMISASAKWSILAPVFIPMLMLLGISPEASQAAYRVGDSSTNITPLMP-YFVLVLGFARTGIGTLIALMLPYSLTLLL- | |||||||||||||
9 | 4r0cA | 0.13 | 0.12 | 4.32 | 2.33 | PROSPECTOR2 | RLPTLLFV------WFCLLLLPLTAVLGALDVTLRYLFTTLVGNFTGFAPLGVVLVAMLGGVAEQSGLLSVSLASLVRRSSGGA---LVFTVAFAGVLSSLTVD--AGYVVLIPLAGLVFQLAGRPPIAGIATAFAAVSGGFSAVGPVDATLAGLSTDRTVAATGNYWFIIASTFLVTGLVTLITRTLTEPRLAHANTVADASVDASRAMKWTGLTLAILLAGLALLVLPNDAVVIVALIAGICGAVYGRVSGQFRNSGAVITAMEVTMASMAGYLVLMFFAAQFVAWFNYSQLGLLLAVKGAALTVPKVVLLLLFVVLTALINLMIGSSAKWSILAPVFIPMLMLLGISPEASQAAYRVGDSSTNIITPLMPYFVLVLGFAETGIGTLIALMLPYSLTLLLG | |||||||||||||
10 | 4r1iA | 0.10 | 0.09 | 3.31 | 2.56 | SAM | --------------------------------GLIKILTHTVKNFTGFALGTVLVSLLGVGIAEKSGLISALMRLLLTKSPRK---LTTFMVVFTGILSNTASE--LGYVVLIPLSAVIFHSLGRHPLAGLAAAFAGVSGGYSANLTIDPLLAQQAA--QVGPEANWFFMAASTFVIALIGYFVTEKIVEPQGPQSD-SNEITPLEYKGLIWAGVVFIALSALLAWSIDGILRHP-IFLLFALPGIVYGR-ITRSRGEREVVNAMAESMSTLGLYLVIIFFAAQFVAFFNWTNIGQYIAVKGAVFGLAGSVLFIGFILICAFINLMISASAQWAVTAPIFVPMLMLAGYAPEVIQAAYRIGDSVTNIITPMMSYFGLIMATVMAGVGTLISMMLPYSAFFLIA | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |