Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140
| | | | | | | |
| Seq | QWQNRVYLQREKRNLNDSYGWKSTEGSPVLVDKSLGKHITPVTLKSKIKRNPLYSDIRTVDGWESKKTQPSWTIQEYDRHSLHSNLAGYLKHSEDPSNLSFWMEDLYTPGYDSLLKKKENELKRNKICKIITLISVLICIFIVIVTVPIVVT |
1 | 1kanA | 0.08 | 0.07 | 2.85 | 0.94 | SPARKS-K | | DIEMMCVMSTEE---AEFSHEWTTGEWKVEVNFYSEEILLDYASQVESDWPLTHGQFFSILPI-------------YDSGGYLEKVYQTAKSVEAQKFHDAICALIVEELFEYAGKWRNIRVPTTFLPSLTVQVAMAGAMLIGLHHRICYTT |
2 | 6msqA | 0.20 | 0.09 | 2.94 | 0.50 | FFAS-3D | | --------------------------------------------------------------------------SEYEIRKALEELKASTAEKRATASLRAITEELKNPSEDALVEHNRAIVEHNAIIVENNRIIAAVLELIV--------- |
3 | 5xnlR | 0.19 | 0.12 | 3.82 | 0.31 | HHpred | | ----------------------------------FPGAKSPEYLDGSLV-----GDYGFDPFGLGK--PAEFDLDSLDQNLA-KNLAGDVTEFEDVKSTP------FQPYVFGLQRFRECELIHGRWAMLATLGALTVEWLT---------- |
4 | 6nmcB | 0.11 | 0.11 | 3.80 | 0.69 | MUSTER | | --SKAMYEAKEKKMQENTKIDTLTDEQHDALAQLCA-HKFHSNKDSLFLSESAFSMQSDENSKLREVGLP--TIE-WSFYDNSHIPDDSFREWFNFANYSELSEGLELDLDDDETYELVYDELYTEAMGEYEELNQDIEKYLRRIDEEHGTQ |
5 | 3kflA | 0.04 | 0.02 | 1.01 | 0.64 | CNFpred | | ----------------------------------------------------------------------------ASLNNLAGTVDHYYCLP----DIQHALIAIFDVSLNAYVTENAPWKLDTARLGTVLYVTMEGLRICTMFLQPVMPQ |
6 | 1vt4I3 | 0.13 | 0.11 | 3.86 | 0.72 | HHsearch-2 | | EY-ALHRSIVDHYNIP------KTFDSDDLIPPYLDQYFYSHI-GHHLKNILFRMVFLDFRF-LEQKIRHDSTAWN----ASGSIL-NTLQ------QLKFYKPYIC-DNDNAILDFLPKIEENLICSKYTDLLRIALMAEDE----AIFEE |
7 | 2fbqA | 0.07 | 0.07 | 2.95 | 0.75 | Neff-PPAS | | RFLGPFCASLEKELDRRQAKPEAQHATLEDLLHLLVSQAMAVKPRSGNDLSIFMRLLGLAFSQSQGHLRKYLEEVYGKVFRRYMLLVNEAAPKLPPIELFWRVHFMLGAAAFSMSGIKALRAMAETDFGVNTSTEQVMHLMVPFFAAGMRAE |
8 | 2kogA | 0.15 | 0.11 | 3.75 | 0.59 | HHsearch | | ---------------MSATAATVPPAAPA------GEGGP----------PAPPPNLTSNRRLQQTQA----QVDE-VVDIMRVNVDK-VLEDQKLSELDDRADALQA--GASQFETSAAKLKRKKNLKMMIILGVI-CAIILIIIIVYFS- |
9 | 2kr6A | 0.12 | 0.11 | 3.75 | 0.66 | SP3 | | ----MVWLVNMAEGDPEAQRRVSKNSKYNAESTERESQDTVAENDDG-------GFSEEWEAQRDSHLGPHRSTPESRAAVQELSSSILAGEDPEERGVKLGLGDFI---FYSVLVGKASATNTTIACFVAILIGLCLTLLLLAIFLPISIT |
10 | 2kr6A | 0.10 | 0.09 | 3.39 | 0.62 | PROSPECTOR2 | | M----VWLVNMAEGDPEAQRRVSKNSKY-------NAESTERESQDTVAENDDGGFSEEWEAQRDSHLGPHRSTPESRAAVQELSSSILAGEDPEERGVKLGLGDFI---FYSVLVGKASATASTIACFVAILIGLCLTLLLLAIFLVFYYI |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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