Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100
| | | | | |
| Seq | VKVTLEAAACTPILSNGGVVNFGSHSVNRLSTQHYTQIGTRNINMTITCESATGIAITARDTRMDSMTTGKDSEGQSGVKYTLNGGGYISQTTRLFGLGKTKDNKNIGSYA |
1 | 2w07B | 0.15 | 0.14 | 4.57 | 1.15 | MUSTER | | ---NVYIPPCTINNGQNIVVDFGNINPEHVDNSR----GEVTKTISISCPYGS-LWIKVTGNTMGGGQNNVLATNITHFQGKGMSTPLTLRSTFTF-FRNGSGILNGGDFR |
2 | 5afoA | 0.12 | 0.12 | 4.16 | 1.07 | HHsearch-2 | | LSGKVTTQGCELAAGTSLDIDFGEYQAHDFKRTGQPPVQKIQKELTFNCTNIVHIYLSLEGTPNAAYPSAISGNADVGAVIEDGKGNIPNDSNSLLEMNPYKRTTTITAYP |
3 | 2w07B | 0.15 | 0.14 | 4.83 | 1.14 | Neff-PPAS | | ---NVYIPPCTINNGQNIVVDFGNINPEHVDNSR----GEVTKTISISCPYSLWIKVTGNTMGGGQNNVLATNITHFGIALYQGKGMSTPLTLTSVPFRNGSGILNGGDFR |
4 | 6erjB | 0.12 | 0.11 | 3.84 | 1.60 | HHsearch | | FEGKLVNAACAVSTKADQTVTLGQYRTASFTAIGDT-TAQVPFSIVLDCDPKVTAAVAFSGQADNTNTNLLATATGVGIEILDNTS-------SPLKPDGASEGNTLTAR- |
5 | 6erjB | 0.10 | 0.09 | 3.32 | 1.00 | SPARKS-K | | FEGKLVNAACAVSTKSAQTVTLGQYRTASFTAIGD-TTAQVPFSIVLNDKVAATAAVAFSGQAD--------NTNTNLLAVSSADNS---TTATGVGIELDNTSSPLKPDG |
6 | 6erjB | 0.14 | 0.12 | 4.01 | 0.64 | FFAS-3D | | FEGKLVNAACAVSTKSADQVTLGQYRTASFTAIGDTT-AQVPFSIVLNCDPKVTAAVAFSGQADNTNTNLLAVS-----------SADNSTTATGVGIEILDNTSS----- |
7 | 5afoA | 0.12 | 0.12 | 4.15 | 0.65 | HHpred | | LSGKVTTQGCELAAGTSLDIDFGEYQAHDFKRTPPQNVQKIQKELTFNCTNGVHIYLSLEGTPNAAYPSAILGNADVGAVIEDGKGNIPNNSLLEMNPGSEKVTTTITAY- |
8 | 3bfwA | 0.11 | 0.10 | 3.60 | 1.10 | MUSTER | | ------AKPCTVSTTNA-TVDLGDLYSFSLMSAGAAS-AWHDVALELTCPVTSRVTASFSGAADSTGYKNQGTAQNIQLELQDDSGNTNTGATKTVQVDDSSQSAHFPLQV |
9 | 5lp9A | 0.18 | 0.14 | 4.70 | 0.99 | CNFpred | | FKGEVVNAACAVDASVDQTVQLGQVRTASLKQA-GATSSAVGFNIQLNDCDATKAAVAFLGTAIDA-----------TRTDVLALQSSAAGSATNVGVQILD--------- |
10 | 6erjB | 0.13 | 0.12 | 4.09 | 1.07 | HHsearch-2 | | FEGKLVNAACAVSTKADQTVTLGQYRTASFTAIGDT-TAQVPFSIVLDCDPKVTAAVAFSGQADNTNTNLLATATGVGIEILDNTS-------SPLKPDGAVETNTLRFTA |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|