Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180
| | | | | | | | | |
| Seq | MMMKWIISILTMSIMPVLAYSSSIFRFHSEDVELCYGNLYFDRIYNNVVNIKYIPEHIPYRYNFINRTFSVDELDDNVFFTHGYFLKHKYGSLNPSLIVSLSGNLKYNDIQCSVNVSCLIKNLATSTSTILTSKHKTYSLHRSKCITIIGYDSIIWYKDINDKYNDIYDFTAICMLIASTLIVTIYVFKKIKMNS |
1 | 2mouA | 0.09 | 0.09 | 3.33 | 0.74 | SPARKS-K | | DFKAIAQQTAQEVLGYNRDTKITVSSKASRKFNLYRVEGIIPESPAKLSDFLYQTGDRITWDKSLQVYNMVHRIDSDTFICHTITQSFAVGSISPRDFIDLVYIKRYEGNM-----NIISSKSVDFPEYPPSSNYIRGYNHPCGFVCSPMEEVMFVQTEMRGKLSPSIIEKTMPSNLVNFILNAKDGIKAHRTPS |
2 | 2mouA | 0.10 | 0.10 | 3.58 | 0.53 | FFAS-3D | | MDFKAIAQQTAQEVLGYNRDTITVSSKASRKGNLYRVEGIIPESPAKLSDFLYQTGDRITWDKSLQVYNMVHRIDSDTFICHTITQSFAVGSISPRDFIDLVYIKRYEGNMNIISSKSVIRGYNHPCGFVCSPMEENP----AYSKLV-----MFVQTEMRGKLSPSIIEKTMPSNLVNFILNAKDGIKAHRTPS |
3 | 4ckbA3 | 0.16 | 0.09 | 2.89 | 0.26 | HHpred | | ------------------------------------------TI-DQTANVVFRMSS-----------------EPIIFGESSIFVEYKKFSNDKGFPKEGSGKIVLNGVNYLNNIYCLEYINTNEV--GIK-----SVVVPIKFIAEFLVNGEILK-PRIDYYGNQHNIIVE---------------------- |
4 | 6n2cA2 | 0.12 | 0.11 | 4.00 | 0.75 | MUSTER | | YLLAWDSNIFDFTTYGLFSSDKIIF---NNNITVTTRNMYSS----SDITLRSDNNRPGYTIKADNIGSFIFGGNNKVVVNNLMYTGITFNGNNNRLESNSLLFSDGT-ISLSGKDEIVANALFCDTLDIRNGSSNLVTINEFAYFKLNIWTDKMVLKSNSKLFGGDIEIRGILSADVGTVV-IPAIIEEIKKNT |
5 | 4m4dA | 0.11 | 0.09 | 3.32 | 0.81 | CNFpred | | YAAKEGLVALQRELYKIT-DFSGDFKIKA-RGQYEFHSLEIQNCELRGSSLKLLP-------------------GQGLSLAI------------SDSSIGVRGKWKVRKLKLHGSFDLDVKGVTISVDLLLGMDSGRPTVSASGCSSRIC-DLDVHISGNVGWLLNLFHNQIESKLQKVLENKVCEMIQKSVTSD |
6 | 4ifaA3 | 0.20 | 0.07 | 2.14 | 0.71 | HHsearch-2 | | EKYEDVYKKNPLSHEISLKRGKNSYQFELSDTEVGWAQLYFDHFTHELVGVRYDDRQRPYQLVYSG--------------------------------------------------------------------------------------------------------------------------------- |
7 | 2mouA | 0.09 | 0.08 | 3.18 | 0.85 | Neff-PPAS | | -FKAIAQQTAQEVLGYNRDTKITVSSKASRKGNLYRVEGIIPESPAKLSDFLYQTGDRITWDKSLQVYNMVHRIDSDTFICHTITQSFAVGSISPRDFIDLVYIKRYEGNMNIISSKSV------DFPEYPPSSNYIRGYNHPCGFVCSPMEVMFVQTEMRGKLSPSIIEKTMPSNLVNFILNAKDGIKAHRTPS |
8 | 4ifaA3 | 0.20 | 0.07 | 2.14 | 0.26 | HHsearch | | EKYEDVYKKNPLSHEISLKRGKNSYQFELSDTEVGWAQLYFDHFTHELVGVRYDDRQRPYQLVYSG--------------------------------------------------------------------------------------------------------------------------------- |
9 | 6agfB | 0.14 | 0.12 | 4.04 | 0.61 | SP3 | | ------GCVEVDSETEAVYGMTFKILISCKRRSETNAETFTEWTFRQK-----GTEEFVKILRYENEVLQLEEDERF---EGRVVWNGSRGTKDLQDLSIFITNVTYNHSECHVYRLLFFENYEHNTS-----------VVKKIHIEVVDKAN----RDMASIVSEIMMYVLIVVLTIWLVAEMIYCYKKIAAAT |
10 | 2mouA | 0.11 | 0.10 | 3.74 | 0.62 | PROSPECTOR2 | | MDFKAIAQQTAQEVLGYNRDTSTVSSKASRKFHLYRVEGIIPESPAKLSDFLYQTGDRITWDKSLQVYNMVHRIDSDTFICHTITQSFAVGSISPRDFIDLVYIKRYEGNMNIISSKS------VDFPEYPPSSNYIRGYNHPCGFVCSPMEENFVQTEMRGKLSPSIIEKTMPSNLVNFILNAKDGIKAHNSHS |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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