>PF06516 (307 residues) VKVLLIGMFAQEAAVWTDKLKLDQAIPVPGLSPTYPAVRCNRDDVCQLTTDMGKANAAAS VAALVHSGLFDLRQSYFIVAGVAGVDPAQGTIGTAAWSRYLVDSDLAWEVDARERPAGWS TGYLGIGAKAPGVKPALGYGTEVYRLNEGLLNKALELSRGVTLADAAEAKAYRAQYPSAP ANQPPQVTQCDSLTGNNWFHGDLLGQRARDWVALLTDQQGSYCMSSQEDNATYTALMRGA EAGLLDAQRVAVLRAASNFDRPHPGQTALASLTANAGGFPLALQNLYRAAHPLVQDIVQH WPDWKGG |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 | | | | | | | | | | | | | | | | |||||||||||||
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Seq | VKVLLIGMFAQEAAVWTDKLKLDQAIPVPGLSPTYPAVRCNRDDVCQLTTDMGKANAAASVAALVHSGLFDLRQSYFIVAGVAGVDPAQGTIGTAAWSRYLVDSDLAWEVDARERPAGWSTGYLGIGAKAPGVKPALGYGTEVYRLNEGLLNKALELSRGVTLADAAEAKAYRAQYPSAPANQPPQVTQCDSLTGNNWFHGDLLGQRARDWVALLTDQQGSYCMSSQEDNATYTALMRGAEAGLLDAQRVAVLRAASNFDRPHPGQTALASLTANAGGFPLALQNLYRAAHPLVQDIVQHWPDWKGG | |||||||||||||||||||
1 | 5b7pA | 0.14 | 0.11 | 3.79 | 2.00 | SPARKS-K | APILIQGAMDVEVETLVAALKDKQELTVGSW--TYWQGTLSGYPVVVSRTEVGLANAAAATTLAMERFQPR----LVINQGTAGGHDPALHRGDIVIGTKSFNMGAYRSDLTPAEQGVDPSKWHNFEVTMRLRDNGKLVEHSSFAGDPELVGRALGMADRYRHGR---------------------VVPGIIGTADEWNRQVARINWLHQTYQ---------TAAEMETSSAALVAEAYK-------VPFVGIRVLSNTDLHGEEFD------------PQTAIHCQQFVIDYAKALINGF------ | |||||||||||||
2 | 6aymA | 0.15 | 0.11 | 3.73 | 2.47 | FFAS-3D | MKIAILGAMSEEITPLLETLKDYTKIEHAN--NTYYFAKYKDHELVLAYSKIGKVNSTLSASVMIE----KFGAQVLLFTGVAGAFNPELEIGDLLYATKLAQYD-------------------LDITAFGHPLGFVPGNEIFIKTDEKLNNLALEVAKELNIK----------------------LRAGIIATGDEFICDEAKKAKIREIFNAD--------ACEMEGASVALVCDALKV-------PCFILRAMSDKAGEKAEFDFDEFV-------INSAKISANFVLKMCEKL---------- | |||||||||||||
3 | 4g41A | 0.18 | 0.14 | 4.45 | 2.80 | HHpred | MKIGIIAAMEEELSLLLANLLDAQEHQVLSK--TYYTGRFGKHELILVQSGVGKVMSAMTVAILVEH--F--KAQAIINTGSAGAVASHLAIGDVVVADRLVYHDVDAT-----A-FGYA----------YGQMAG---QPLYYDCDPQFVAIFKQVLKH----------------------EKTNGQVGLIATGDSFVAGQDKID---QIKTAFSNV----LAVEMEGAAIAQAAHTAGK-------PFIVVRAMSDTAAHDANITF-DQFI------IEAGKRSA----QILMTFLENLPV---- | |||||||||||||
4 | 5b7pA | 0.14 | 0.11 | 3.79 | 1.82 | MUSTER | APILIQGAMDVEVETLVAALKDKQELTVGS--WTYWQGTLSGYPVVVSRTEVGLANAAAATTLAMERFQPR----LVINQGTAGGHDPALHRGDIVIGTKSFNMGAYRSDLTPAEQGVDPSKWHNFEVTMRLRDNGKLVEHSSFAGDPELVGRALGMADRY---------------------RHGRVVPGIIGTADEWNRQVARINWLHQTYQ---------TAAEMETSSAALVAEAYKV-------PFVGIRVLSNTDLHGEEFD------------PQTAIHCQQFVIDYAKALINGF------ | |||||||||||||
5 | 4wkbA | 0.20 | 0.15 | 4.90 | 2.32 | CNFpred | MKIGIIGAMQQEVAILKDLIEDVQEVNQA--GCTFYSGQIQGVDVVLLQSGIGKVSAALGTALLISQY----APDVVINTGSAGGFDASLNVGDVVISSEVRHHDADVTA------FGYEIGQMAGQ-------------PAAFKADEKLMTVAEQALAQL---------------------PNTHAVRGLICTGDAFVCTAERQQFIRQHF-------PSVVAVEMEASAIAQTCHQFK-------VPFVVVRAISDVADK----ESPLSFEE---FLPLAAKSSSAMVLKMVELLKENL------ | |||||||||||||
6 | 5b7pA | 0.14 | 0.11 | 3.88 | 0.96 | HHsearch-2 | APILIQGAMDVEVETLVAALKDKQELTVGSW--TYWQGTLSGYPVVVSRTEVGLANAAAATTLAMER--F--QPRLVINQGTAGGHDPALHRGDIVIGTKSFNMGAYRSDLTPAEQGVDPSKWHNFEVTMRLRDNGKLVEHSSFAGDPELVGRALGMADR---------------------YRHGRVVPGIIGTADEWNRQVARIN---WLHQTY-QT----A-AEMETSSAALVAEAYKV-------PFVGIRVLSNTDLHG------EEFD------PQTAIHCQQFVIDYAKALINGF------ | |||||||||||||
7 | 5b7pA | 0.14 | 0.11 | 3.79 | 2.10 | Neff-PPAS | APILIQGAMDVEVETLVAALKDKQELTVGS--WTYWQGTLSGYPVVVSRTEVGLANAAAATTLAMERFQPR----LVINQGTAGGHDPALHRGDIVIGTKSFNMGAYRSDLTPAEQGVDPSKWHNFEVTMRLRDNGKLVEHSSFAGDPELVGRALGMADRY---------------------RHGRVVPGIIGTADEWNRQVARINWLHQTYQ---------TAAEMETSSAALVAEAYKV-------PFVGIRVLSNTDLH------------GEEFDPQTAIHCQQFVIDYAKALINGF------ | |||||||||||||
8 | 4g41A | 0.18 | 0.13 | 4.36 | 1.50 | HHsearch | MKIGIIAAMEEELSLLLANLLDAQEHQVLSK--TYYTGRFGKHELILVQSGVGKVMSAMTVAILVEH----FKAQAIINTGSAGAVASHLAIGDVVVADRLVYHDVDATA----F--GYA----------YGQMAG---QPLYYDCDPQFVAIFKQVLKH----------------------EKTNGQVGLIATGDSFVAGQDKID---QIKTAFSNV----LAVEMEGAAIAQAAHTAGK-------PFIVVRAMSDTAAHDANITF-DQFI------IEAGKRSA----QILMTFLENLPV---- | |||||||||||||
9 | 3nm4A | 0.13 | 0.09 | 3.30 | 2.33 | PROSPECTOR2 | QKIGILGAMREEITPILELFGVDFEEIPLG-GNVFHKGVYHNKEIIVAYSKIGKVHSTLTTTSMIL----AFGVQKVLFSGVAGSLVKDLKINDLLVATQLVQHDVDLSAFD-------------------HPLGFIPESAIFIETSGSLNALAKKIANE----------------------QHIALKEGVIASGDQFVHSKERKEFLVSEF--------KASAVEMEGASVAFVCQKFGV-------PCCVLRSISDNADEK----AGMSFDE-------FLEKSAHTSAKFLKSMVDEL------ | |||||||||||||
10 | 5b7pA | 0.14 | 0.11 | 3.79 | 2.51 | SAM | -PILIQGAMDVEVETLVAALKDKQELTVGSW--TYWQGTLSGYPVVVSRTEVGLANAAAATTLAMER----FQPRLVINQGTAGGHDPALHRGDIVIGTKSFNMGAYRSDLTPAEQGVDPSKWHNFEVTMRLRDNGKLVEHSSFAGDPELVGRALGMADR----------------------RHGRVVPGIIGTADEWNRQVARIN---WLHQTY-QT----A-AEMETSSAALVAEAYKV-------PFVGIRVLSNTDLH------GEEFD------PQTAIHCQQFVIDYAKALINGF------ | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |