>PF06478 (349 residues) SSAARLEPCNGTDPDHVSRAFDIYNKDVACIGKFLKTNCSRFKNLDKHDAYYIVKRCTKS VMDHEQVCYNDLKDSGVVAEHDFFLYKEGRCEFGNVARKDLTKYTMMDLCYAIRNFDEKN CEVLKEILVTLGACNESFFENKDWFDPVENEAIHEVYARLGPIVANAMLKCVAFCDAIVE KGYIGIITLDNQDLNGNFYDFGDFVKTAPGLGCACVTSYYSYMMPLMGMTSCLESENFVK SDIYGSDYKQYDLLAYDFTDHKEKLFQKYFKHWDRTYHPNCSDCTSDECIIHCANFNTLF SMTIPNTAFGPLVRKVHIDGVPVVVTAGYHFKQLGIVWNLDVKLDTMKL |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | SSAARLEPCNGTDPDHVSRAFDIYNKDVACIGKFLKTNCSRFKNLDKHDAYYIVKRCTKSVMDHEQVCYNDLKDSGVVAEHDFFLYKEGRCEFGNVARKDLTKYTMMDLCYAIRNFDEKNCEVLKEILVTLGACNESFFENKDWFDPVENEAIHEVYARLGPIVANAMLKCVAFCDAIVEKGYIGIITLDNQDLNGNFYDFGDFVKTAPGLGCACVTSYYSYMMPLMGMTSCLESENFVKSDIYGSDYKQYDLLAYDFTDHKEKLFQKYFKHWDRTYHPNCSDCTSDECIIHCANFNTLFSMTIPNTAFGPLVRKVHIDGVPVVVTAGYHFKQLGIVWNLDVKLDTMKL | |||||||||||||||||||
1 | 6nurA | 0.56 | 0.40 | 11.55 | 2.12 | SPARKS-K | --------------------------------------------------------------------------------------------------QRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQSLLKTVQFCDAMRDAGIVGVLTLDNQDLNGNWYDFGDFVQVAPGCGVPIVDSYYSLLMPILTLTRALAAESHMDAD-LAKPLIKWDLLKYDFTEERLCLFDRYFKYWDQTYHPNCINCLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRL | |||||||||||||
2 | 6nurA | 0.56 | 0.40 | 11.55 | 3.16 | FFAS-3D | --------------------------------------------------------------------------------------------------QRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQSLLKTVQFCDAMRDAGIVGVLTLDNQDLNGNWYDFGDFVQVAPGCGVPIVDSYYSLLMPILTLTRALAAESHMDADLAKP-LIKWDLLKYDFTEERLCLFDRYFKYWDQTYHPNCINCLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRL | |||||||||||||
3 | 6nurA | 0.56 | 0.40 | 11.55 | 14.06 | HHpred | --------------------------------------------------------------------------------------------------QRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQSLLKTVQFCDAMRDAGIVGVLTLDNQDLNGNWYDFGDFVQVAPGCGVPIVDSYYSLLMPILTLTRALAAESHMDADLAK-PLIKWDLLKYDFTEERLCLFDRYFKYWDQTYHPNCINCLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRL | |||||||||||||
4 | 6nurA | 0.56 | 0.40 | 11.55 | 2.00 | MUSTER | --------------------------------------------------------------------------------------------------QRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQSLLKTVQFCDAMRDAGIVGVLTLDNQDLNGNWYDFGDFVQVAPGCGVPIVDSYYSLLMPILTLTRALAAESHMDADLAK-PLIKWDLLKYDFTEERLCLFDRYFKYWDQTYHPNCINCLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRL | |||||||||||||
5 | 4aeeA | 0.13 | 0.08 | 2.89 | 0.67 | CNFpred | --------------------------------------------------MAKFNHDNPRTVDYFIDITKFWIDK----GIDGFRID----VAMGIH-----YSWMKQYYEYIKNTYP-DFLVLGELAENP----RIYMDY---FDSAMNYYLRKAILELLNEFISRINNVYAYIPHYKAL--SLYNMLGSHD----VPRIKSMV-----QNNKLLKLMYVLIFALPGSPVIYYDEIGLEGGR---DPDNRRPMIWDWDLELYEHIKKLIRIYK------------SCRSMRHGYFLVENL--------NLLFIKRWINNEEIIFLLNVS------------------- | |||||||||||||
6 | 6nurA | 0.56 | 0.40 | 11.55 | 4.92 | HHsearch-2 | --------------------------------------------------------------------------------------------------QRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQSLLKTVQFCDAMRDAGIVGVLTLDNQDLNGNWYDFGDFVQVAPGCGVPIVDSYYSLLMPILTLTRALAAESHMDADLA-KPLIKWDLLKYDFTEERLCLFDRYFKYWDQTYHPNCINCLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRL | |||||||||||||
7 | 6nurA | 0.56 | 0.40 | 11.55 | 1.32 | Neff-PPAS | --------------------------------------------------------------------------------------------------QRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQSLLKTVQFCDAMRDAGIVGVLTLDNQDLNGNWYDFGDFVQVAPGCGVPIVDSYYSLLMPILTLTRALAAESHMDADLAK-PLIKWDLLKYDFTEERLCLFDRYFKYWDQTYHPNCINCLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRL | |||||||||||||
8 | 6nurA | 0.56 | 0.40 | 11.47 | 7.77 | HHsearch | --------------------------------------------------------------------------------------------------QRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQSLLKTVQFCDAMRDAGIVGVLTLDNQDLNGNWYDFGDFVQVAPGCGVPIVDSYYSLLMPILTLTRALAAESHMDADLAK-PLIKWDLLKYDFTEERLCLFDRYFKYWDQTYHPNCINCLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSR- | |||||||||||||
9 | 3ld1A | 0.07 | 0.06 | 2.47 | 1.00 | PROSPECTOR2 | LRDVILVS-KDIPEQLCDALFFYTSHNPKDY---------------------------ADAFAVRQKFDRNLQTGKQ------FKFETVCGLFLLKGVDKIFARKYRELLKTACQWSLTVETLDARALTLDEIFDPTEIL---WLQVAAKIQVSAMAMRRLVGEVTAKVMDALGSNMSALFQIF---------KQQIVRIFQAALAIFENVSE--------LPQRIAALKMAFAKCAKSITVVVMERTLVVREFAGTCLASINGAVAKFFEELPNDNIPNAPRAKGTQVVVRGMRNDLTLLDQKAEIPVESEGWSAILGGHLCYVFKSGDRFYAAPLSGNFALHDVVCL | |||||||||||||
10 | 6nurA | 0.56 | 0.40 | 11.46 | 3.06 | SAM | ---------------------------------------------------------------------------------------------------RLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQSLLKTVQFCDAMRDAGIVGVLTLDNQDLNGNWYDFGDFVQVAPGCGVPIVDSYYSLLMPILTLTRALAAESHMDADLA-KPLIKWDLLKYDFTEERLCLFDRYFKYWDQTYHPNCINCLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSS-- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |