Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120
| | | | | | |
| Seq | MAATMQALLVIALLHLATATPVVTKHKVSTFSTGFLGHPVGGLGYGGLGYGGLGYGGLGVAGLGYGGLGYPGAALGGAYTHHAAGLVHPYGGLGYHAAPYHHALGGLGYPLGIGAGVVAPHVVNSKIAAPLAPVVAAI |
1 | 5aftV | 0.06 | 0.05 | 2.28 | 1.07 | SPARKS-K | | -------------SGNKVSRQSVLCGQNIVLNTIIMNDCIIRGDLANVGRHCVVKSRSVIRPPFKKFSKGVAFFPLHIGDHVFIEEDCVVNAAQIGSYVHVGKNCVIGRRCVLKDCCKILTVLPPETVVPQELMIDVT |
2 | 5h7iC | 0.13 | 0.13 | 4.51 | 0.37 | FFAS-3D | | -SRLFKLGLFFAQLCVKSVVSCISTSHYATKLTRYFGFPCAKAIRYKPSTMATTDNSWVSIDEPDCLLFHTGTLLAGMHTTSPLQIDPRANIVSLTIWPLQDAMKFVKELFTVCETVLSLNALSRSTGVPLLPQISSM |
3 | 6mjpF3 | 0.04 | 0.01 | 0.40 | 0.18 | HHpred | | -ISLVVCIPLLTMLVVPLSAVN-PRQGRFA------------------------------------------------------------------------------------------------------------ |
4 | 2w0cT | 0.15 | 0.13 | 4.41 | 0.92 | MUSTER | | MANFLTKNFVWILAAGVGVWFYQKADNAAKTATKPIADFLAELQFL--------VNGSNYVKFPNAGFVLTRDALQDDFIAYDDRIKAWLGTHDRHKDFLAEILDHERRVK-----PVYRKLIGNIIDA--STIRAAS |
5 | 3mdoA | 0.18 | 0.04 | 1.42 | 0.32 | CNFpred | | WKGIAQDALIMNIDDLLCVGAVDNILVSSTIGRN-------------------------------------------------------------------------------------------------------- |
6 | 3k1qF3 | 0.24 | 0.06 | 1.80 | 0.54 | HHsearch-2 | | ATAATRAILMHDLLTSANADD--GHQARSACYGPA------------------------------------------------------------------------------------------------------- |
7 | 3p5nA | 0.13 | 0.13 | 4.52 | 0.76 | Neff-PPAS | | RLITISMLSAIAFVLTFIKFPIPFLPPYLTLDFSDVPSLLATFTFGPVAGIIVALVKNLLNYLFSDPVGPFANFLAGASFLLTAYAIYKNKTIVLSILNYFVLLPLYGMKVIIVSGIIPFNIIKGIVISIVFILLYRR |
8 | 3k1qF3 | 0.24 | 0.06 | 1.80 | 0.29 | HHsearch | | ATAATRAILMHDLLTSANADD--GHQARSACYGPA------------------------------------------------------------------------------------------------------- |
9 | 2pb0A1 | 0.20 | 0.19 | 6.04 | 0.81 | SP3 | | TEANETAFKLARHYACVRHSP--FKTKIIAFHNAFHGRSLFTVSVGGQPSDGFGPKPADIIHVPFNDLHAVKAVMDDEPIQGEGGVQAAQCGMGRTGDLFAYALGG-GFPVS---AMLTTQEIASAFGSTGNPLACAV |
10 | 4k0mC | 0.15 | 0.15 | 5.11 | 0.69 | PROSPECTOR2 | | KVYTIDEALAIAKGEKIKEAEEAGADYVGGEEIIQAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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