Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280
| | | | | | | | | | | | | | |
| Seq | MDDDGLNMRNWGYYEQPSLKGHLGLQLMSSMAERDTKPFLSGRDHGVILNPNGAFHPRDCAVSEAPVHMDYVRDSWVNHRDKFLNMLPGNPNFMVYPEPSATHPMQILQPPDTSNDERVVMEDQGVRKEGESLKKRTGGSTPKAPKPKKTKKGPSVPKENGNSSVQRAKPAKKNMDVVINGIDMDISGIPIPVCSCTGTPQQCYRWGCGGWQSACCTTTISIYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLASEGYNFSNPIDLRTHWAKHGTNKFVTIR |
1 | 4btgA | 0.13 | 0.12 | 4.29 | 1.32 | SPARKS-K | | KADAVGKVPPTAILEQTLAPSEH--ELFHHITTDFVCHVLSPLGFILPDAAYVYRVGRTATYPNFYALVDCVRASDLR---RMLTALSSVDSKMLQATFKAKGALA-----------PALISQHLANAATTAFERSRGNFDANPSTPKELDPSARLRNTNGIDQRGRAEVIFSDEELSSTIIPFKLRPINE-TTSYIGQTSAIDHMGQPSHVVVYEDWQFAKEITAFTPVKLANNSNQRDVEPGISDRMSATLAPIGNTFAVSAFVKNRTASNGAEMTLGFP |
2 | 1maeH | 0.08 | 0.08 | 3.10 | 1.55 | Neff-PPAS | | -SGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQILGHDVDAISVAQDGGPDLYALSAGTEVLDQDQSTVELGSGPQVLSV |
3 | 2nbiA1 | 0.11 | 0.10 | 3.74 | 1.29 | PROSPECTOR2 | | QPSDLNPSSQLPYSDASRPPSCLSFGRPDCDVLPTPQNINCPRCCATECRPDNPMFTPSPDGSPPIC-------SPTMLPTNQPTPPEPSSAPSDCGEVIEECPLDTCFLPTSDPARPPDCTAVGPFECSPDNPMFTPSPDGSPPNCSPTMLPTPQPSTPTVITSPAPSSQPSQCAEVIEQCPIDECFLPYG---DSSRPLDCTDPAVNNCPACCCRPDNPMFTMPSPEPSSQPSDCGEVIEECPIDACFLPKSDSARPPDSPTMLPSPSPSAVTVPLTPTR |
4 | 4btgA3 | 0.10 | 0.10 | 3.54 | 1.16 | SPARKS-K | | GSARGLTQAFAIGELKNQLPLQFTRTFSASMTSRVGRTATYPFDANAVVSLDPSARLRNTGIDQLRSNLAAYQDMVKQRGRAEVIFSDEELSSTIIPLRPINETTSYIGQTSAIDHMGQPSHVVVYEDWQFA-KEITAFTPVKLANNSNQRFLDVEPDRMSATLAPIGNRGTVNSNGAEMTLGF------PSVASNDLAAVMHYAVAHNPEVVVSEHQGGSLYLVWNVRTELRIPVGYNAIEGGSIREPLEAIAYNQPSEVKVLDLANHTTSIHIWP----- |
5 | 5x6oG | 0.09 | 0.08 | 3.07 | 0.42 | FFAS-3D | | -DDDDIGTRPPRFTQIPPSSAATQIEVTTTTLNNKQSKNDNQVNQLNKAQGEASM-LRDNIEREKEKNIQAVKVNELVKHLQELAKLKQELQKLEDEKKFLQRGKSKREVITNVK------PPSTTLNTITPDSSSVAIEAKPQSPQSKKRKISDNLLKKNMVPLNPNRIIPDETSLFLESI---------LLHQIIGADLSTIE-------------ILNRLKLDYITKFKNFVIAKGAPIGKSIVSLLLRCKK-----TLTLDIAVLIKEHPNESKLAV- |
6 | 4ny2A | 0.16 | 0.13 | 4.24 | 0.40 | HHpred | | ---------------------NASVEVIKVLNQGGVKAFYF----------NAWHLDGIGDENEALEALKLALDGH----------IVGNHSYDHMIHNCVADCHQIHSYQDPVRDAASFEQNLITLEK--YLP-TIRSYPNY----KGYELARLPYTDPANPSNIQVQNILANQGYQTHGWDVDWWGIPMPANSLTEALNSCFPCLHADK------VIVLTHDFLFED---GKRGMGATQNLPKLAEFIRIAKEAGYVFDTMDNYTPRWSVGKTYQYVLY- |
7 | 2atyA | 0.11 | 0.10 | 3.71 | 0.85 | MUSTER | | IGEKSLLCITKDKVDGTWDKPAPKCEYYSSCPEPIVPGGYKIRGSTPYRHGDSVTFACKTNFSMNGNKSVWCQANNMWGPTRLPTCVSVFPLEGSIEGRGGSELADPEVPRDCGCKPCICTVPEVSSVFIFPPKPKDVLTITLTPKVDISKDDPEVQDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDW-----GKE--KCRVNSAAFPAPIEKTISKTKGPQLYTIPPPKEQMAKDKVS-------LT--MITDF---FPEDITVEWQWNGAENYKNTQ |
8 | 1nisA | 0.22 | 0.05 | 1.46 | 0.43 | CNFpred | | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ICIGVGGADAVDVMAIPWELKCPKVI---GVKLTGSLSPKDVILKVAGILTVKG----------------GTGAIVEYH |
9 | 2pffB | 0.18 | 0.15 | 4.99 | 0.56 | HHsearch-2 | | PFDKKLNILEWLENPSNTDKDYLSIPISGVIQLAHVTAKLLGFTPGEL----RSYLKGATGHSQGLVAVAIAETSWESFFKTVLFFIGV-RCYEAYPNTSLPPSIPMLNLTQEQVQDYVQVEISLVRKAKAPSGLDQ------SRIPFSERKLKF-SNRFASPFHSHPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDL-----------RVLSGSISERIVDCLPVKWET--------------TTQFKATHILDFGPGLGVLTHRNKDGTGVRVIVA |
10 | 2tmaA | 0.08 | 0.07 | 2.79 | 1.52 | Neff-PPAS | | --EADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAE---------------------------KYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQ-------KLKYKAIS |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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