Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140
| | | | | | | |
| Seq | VASVATANAQQRQLQVGVLECSGGQNVGFVVGSVTDLQCAFRADGRRPEPYVATIHRFGLDLGFTQDTGFAWAVYAPTDRIGRGDLAGSYGGVGANASVGVGFGGNLLVGGSSNAYSLQPLSLQGQTGLNVTAGVADLQLR |
1 | 5uc0A | 0.24 | 0.21 | 6.43 | 1.31 | HHsearch-2 | | IASAVEKAFQSFGLPNGYILGEEGSGGGLTYG-----EGTLYTKNAG--DHKTFWPSLGWDFGGQGSRV---LVYNL---DDIQHLYGRYAGVAGSAYVIAGVGFNVLKR---ENIVLVPIRT--GIGARLGVNIGYLKLS |
2 | 5uc0A | 0.24 | 0.21 | 6.42 | 1.38 | HHsearch | | IASAVEKAFQSFGLPNGYILGEEGSGGGLTYG-----EGTLYTKNAG--DHKTFWPSLGWDFGGQGSRV---LVYNL---DDIQHLYGRYAGVAGSAYVIAGVGFNVLKR---ENIVLVPIRT--GIGARLGVNIGYLKL- |
3 | 4ea7A2 | 0.15 | 0.12 | 4.04 | 1.05 | SP3 | | VNAIHPSAVVSPSVRLGE-GVAVMAGV--AINADSWILAIINTGA--------VVDH-DCRLG--AACHLPASALAGGVSVGERA----FLG--VGARVIPGVGADTIVGGGVRDLP------DSV----LAIGVPAKIKG |
4 | 6beaA1 | 0.16 | 0.14 | 4.71 | 0.90 | SPARKS-K | | VTLNTEKTTLDQDVKITAVTIETSD-------SDKDLNVTF---GGHDITATSTVNDFVEGVKVSGNKNVVINITAQGE--GTYVRTAMVIDSTGDV---VVNGGNFVAKNEKGSA--TGISLEATTGNNLTLNGTTINAQ |
5 | 5uc0A | 0.21 | 0.18 | 5.86 | 0.48 | FFAS-3D | | IASAVEKAFQSFGLPNGYILGEEGSGGGLTYGEG-----TLYTKNAGDHKTFWQGPSLGWDFGGQGSRVLVY------NLDDIQHLYGRYAGVAGSAYVIAGVGFNVLKR--ENIVLVP---IRTGIGARLGVNIGYLKL- |
6 | 5uc0A | 0.23 | 0.20 | 6.22 | 0.52 | HHpred | | -------AFQSFGLPNGYILGEEGSG-AFIGG-LTYGEGTLYTKNAGDHKTFWQGPSLGWDFGGQGSRV---LVYNLD---DIQHLYGRYAGVAGSAYVIAGVGFNVLK---RENIVLVPIRT--GIGARLGVNIGYLKLS |
7 | 5n8pA2 | 0.17 | 0.16 | 5.34 | 0.87 | MUSTER | | -NATGTSDSSSAALAAGTVALAGVETVNIAATDTNVDTLTLQATSAKSIVVTGN----GLNLTNTGNTAVT-SFDAVTGTGSAVTFVSANTTVGEVVTIRGGAGADSLTGSATANDTIIG---AGADTLVYTGGTDTFTGG |
8 | 3jx8A | 0.09 | 0.07 | 2.71 | 0.97 | CNFpred | | -------------TKVNRMEINMAGSGNVELVKGYKLECNMAG---SGNIIAKDIQLDNLSCSLASSGEIEVIGTVD-------RASFNVAGS-GEIKAFDCQARKAECNIASGEISVYATQ-----ILDANIVGGEIHYK |
9 | 2vrsC | 0.18 | 0.08 | 2.55 | 0.42 | HHsearch-2 | | LARLVPSGFQAASFPVDVSFTRDSAHAYQVYSSSRVFTITFPTGGDGTANIRSLTVRTGIDT------------------------------------------------------------------------------- |
10 | 5n8pA2 | 0.10 | 0.09 | 3.43 | 0.91 | Neff-PPAS | | ------ATGTSDVFNLTLSSSAALAAGTVALAGVETVNIAATDTNTTAHVDTLTLQATSAKSIVVTGNAGLNLTNTGNTAVVTGTGSAVTFVSANVVTIRGGAGADSLTGSATANDTIIGGA--GADTLVYTGGTDTFTGG |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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