Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140
| | | | | | | |
| Seq | TDVVLIVFIALLLAYAIYDEFIMNMMKGKTRLQVHLKRKNKIDCAIFVGLIAILVYNNVMANGAPLTTYLLVGLALIAVYISYIRWPKLLFKNTGFYYANAFVEYSRIKSMNLSEDGILVIDLEQRRLLIQVKQLDDLEKIYHFFVEN |
1 | 4ro5A | 0.07 | 0.07 | 2.74 | 0.70 | SPARKS-K | | LPSIVVGPLVVLIQLTQYWRYLELTRP----------ADLQADVVTRAGLLAAVAVASAGNRQEFQKYGAVAVRLAAGALIDGQEARDKA-TRDGG-SVSYAIAGEEAARIDLNPNAYFAVLYDEARATVTTTR-RTAPSLVNRLRAA |
2 | 6d2qA | 0.13 | 0.11 | 3.95 | 0.67 | FFAS-3D | | -----------LTRYLFALQIKHDLACGRL----------TCNESSAALLVAHIVQSEIGDFDEVQCKQHLLNAESDYQLLEIARRLELAVAHSGVLVFQNAFNWSKVRKLSFKRKRFLIKLRCQDTLEFMMGSRDCCKVFWKICVE- |
3 | 4ifsA | 0.13 | 0.10 | 3.54 | 0.34 | HHpred | | ---------------------DPPIKQGQTRYHLLFSKDEDMSGSMVSRVMKALVNRKITVPGN-FQGH-------SGAQCCSYKASLLYPLERGFIYVPVHIRFDEISFVNFARGTDFEIEKQGTQYTFSSIEREEYGKLFDFVNAK |
4 | 5ezmA | 0.12 | 0.11 | 4.05 | 0.72 | MUSTER | | WGKQLIGMAIVAACGLLASPVVATLNANHIPNSFYRAYAVWVAVAFVVMLLGIAVARLLLRRGVLPSVAVYAMGMYLGFTVALLGHETVG------PASGADI-APQIAQKLTPEMPLYGVQMLDRHPLMMVGQADELTFGATVEPQR |
5 | 3rkoB | 0.14 | 0.12 | 4.16 | 0.67 | CNFpred | | TPVSALIHAATMVTAGVYLIARTHGLFLMT--------PEVLHLVGIVGAVTLLLAGFAALVVLAYSTMSQIGYMFLALGVQAWDAAIFHLMTHAFFKALLFLA-----------SGSVILACHHEQNIFKMGGLKSIPLVYLCFLVG |
6 | 4il3A | 0.17 | 0.17 | 5.53 | 0.51 | HHsearch-2 | | QSLLSSMSTLVDLPLSYYSHFVLEEKFGFNKLTVKLWITDMIKSLTIGGPILYLFLKIFDKFPTDFLWYIMVFLFVVQILAMTIIMPLFNFTPLE--DG---ELKKSIERVGFPLDKIFVIDGSSKRIVLFDNSTDEITAVLAHEIGH |
7 | 5cwqA | 0.09 | 0.09 | 3.36 | 0.57 | Neff-PPAS | | GDDEVLALALIAIALAVLALAEVACCRGNSEEAERA-SEKAQRVLEEARKVSEEAREQGDDEVLALALIAIALAVLALAEVACCRGNKEEAERAYEDARRVEEEARKVKESAEEQGDSEVKRLAEEAEQLAREARRHVQECRGGWLEH |
8 | 3fssA2 | 0.11 | 0.05 | 1.96 | 0.65 | HHsearch | | ------------------------------------------------------------KINSF------------HLQCHRTKEGTLYFLPDHIIFGILLLDASDIESITYSSITNASLVKDGEKYEFS-IDQTEYAKIDDYVKR- |
9 | 2vv5A1 | 0.12 | 0.11 | 3.82 | 0.64 | SP3 | | VAALAIIIVGLIIARMISNAVNRLMISKIDATVA-----DFLSALVRYGIIAFTLIAALGRVGVQT-ASVIAVLGAAGLVVGLALQGGVLLVMFRPFRAGEYVDLGTVLSVQIFS--TTMRTADGKIIVIPNGKIIAGN------IIN |
10 | 1floa1 | 0.09 | 0.07 | 2.82 | 0.56 | PROSPECTOR2 | | PQFDILCKTPPKVLVRQFVER--------------FERPSGEKIALCAAELTYLCWMITHNGTAIKRATFMSYNTIIS------NSLSFDIVNKSLQFKYKTQKATILEASKLIPAWEFTIIPYYS-------DITDIVSSLQLQFES |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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