>PF06039 (486 residues) DVVLIGAGIMSATLGTLLKELQPELTIEIFERLDMAAAESSDAWNNAGTGHSAFCELNYT PQKQDGSVDIKKAVNIAEQFEVSRQFWAYLVENNIISNPQAFIQSIPHMSFVWGEENVDY LKKRYKALQQCHLFKKMEYSEDQEQLKAWMPLVMEGRDPNQKVAATHMEIGTDVNFGALS RALFNHLEQLDGVNIHFNHDVRDLKKADDGGWIIKVKDRETREKQTIKASFVFIGAGGGS LPLLEKSDIPEGKGFGGFPVSGQWLRCTNPDIIAQHQAKVYGKASVGAPPMSVPHLDTRM IDGERALLFGPYAGFSTKFLKNGSIFDLPKSIKVDNIHPMVSAGLDNIPLTKYLIAQVRQ KPEDRLEALREYYPEARMEDWKLEIAGQRVQVIKKDPEHGGILEFGTEVVSAADGSIAAL LGASPGASTAVSIMLNLLKRCFKDYVETEAWQRKLKQMIPSYGQSLLNNPQHCDELRDWT TSVLEL |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 | | | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | DVVLIGAGIMSATLGTLLKELQPELTIEIFERLDMAAAESSDAWNNAGTGHSAFCELNYTPQKQDGSVDIKKAVNIAEQFEVSRQFWAYLVENNIISNPQAFIQSIPHMSFVWGEENVDYLKKRYKALQQCHLFKKMEYSEDQEQLKAWMPLVMEGRDPNQKVAATHMEIGTDVNFGALSRALFNHLEQLDGVNIHFNHDVRDLKKADDGGWIIKVKDRETREKQTIKASFVFIGAGGGSLPLLEKSDIPEGKGFGGFPVSGQWLRCTNPDIIAQHQAKVYGKASVGAPPMSVPHLDTRMIDGERALLFGPYAGFSTKFLKNGSIFDLPKSIKVDNIHPMVSAGLDNIPLTKYLIAQVRQKPEDRLEALREYYPEARMEDWKLEIAGQRVQVIKKDPEHGGILEFGTEVVSAADGSIAALLGASPGASTAVSIMLNLLKRCFKDYVETEAWQRKLKQMIPSYGQSLLNNPQHCDELRDWTTSVLEL | |||||||||||||||||||
1 | 4x9mA | 0.18 | 0.14 | 4.50 | 1.77 | SPARKS-K | DVLIVGGGVIGCATAYELSQY--KLKVTLVEKHHYLAQETSH--ANSGVIHTGID----------PNPHKLTAKYNILGKKLWLNYFKRL---------GFPRQKIRTLIVAFNEMEREQLEVLKQRGIANQINLEDIQMLSKEETLKLEPYV-----NPEIVAGLKIEGSWAIDPVLASKCLALAAQQN-KVQICTNTEVTNISKQVDGTYLVWTN---NETTPSFKVKKIIDAAGHYADYLAHLAKADD---FEQTTRRGQYVVVTNQGELH-LNSMVFMVPTIHGKGV----IVSPMLDGN--FLVGPT---------------ALDGVDKEATRY----ITKD-------------APCMLTKIGKHMVPSLNINNALISFAGSRPIDK----ATNDFI----IRVAHNDPDFVILGGMSPGLTAAPAIVREAVRLLNWKLTKKPNWNGKYNLPWI-------------------------- | |||||||||||||
2 | 1pj6A1 | 0.11 | 0.09 | 3.23 | 2.61 | FFAS-3D | RIVIIGAGIVGTNLADELVTR--GWNNITVLDQGPLNMPGGSTSHAPGLVFQTNPS--------------------KTMASFAKYTVEKLLSLT--EDGVSCFNQVGGLEVATTETRLADLKRKLGYAAAWGIEG---RLLSPAECQELYPLL----DGENILGGLHVPSDGLASAARAVQLLIKRTESA-GVTYRGSTTVTGIEQSGGRVTGVQT------ADGVIPADIVVSCAGFWGAKIGAMIGM----AVPLLPLAHQYVKTTPVPAQQGRNDQ---PNGARLPILRHQDQDLYYREHGDRYGIGSYAHRPMPVDVDTLGAYAPETVSEHHMPSRLDFTLEDF--------------LPAWEATKQLLPALADSEIEDGFNGIFSFTPD-----------GGPLLGESKEGFYVAEAV--WVTHSAGVAKAMAELLTTGRTDLGECDITR------FEDVQLTPEYVSETSQQNFVEIYDV | |||||||||||||
3 | 4p9sA | 0.16 | 0.13 | 4.31 | 4.07 | HHpred | ETVIIGGGCVGVSLAYHLAKA--GMDVVLLEKSE-LTAGSTW--HAAGLTTYFH----PGIN---------LKKIHYDS----IKLYERLEETGQ----VVGFHQPGSIRLATTPERVDEFKYQMTRTNWHAT-E-QYII-EPEKIHELFPLLNM----DKILAGLYNPGDGHIDPYSLTMALATGARKY-GALLKYPAPVTSLKPRPDGTWDVET------PQGSVRANRIVNAAGFWAREVGKMIGL----DHPLIPVQHQYVITSTPEVKAKRELPVLRDLEGS-----Y-Y--LRQERDG--LLFGPYESQEASWVAHGVPPGFGKELFE-----------SDLD-----------RITEHVEAAMEMVPVLKKADIINIVNGPITYSPDILP------MVGPH---QGVRNYWVAIGGY-GIIHAGGVGTYLSDWILHGEPPFDLIELDPNRYGK-WT-TTQYTEAKARESYGFNNIV--- | |||||||||||||
4 | 3dmeA | 0.15 | 0.11 | 3.80 | 1.70 | MUSTER | DCIVIGAGVVGLAIARALAAG--GHEVLVAEAAEGIGTGTS--SRNSEVIHAGIY---YPADS----------LKARLCVRGKHLLYEYCAARGVP------HQRLGKLIVATSDAEASQLDSIARRAGANGV-DDLQHI-DGAAARRLEPAL-------HCTAALVSPSTGIVDSHALMLAYQGDAESD-GAQLVFHTPLIAGRVRPEGGFELDFG---GAEPMTLSCRVLINAAGLHAPGLARRIGIPRDSIPPEYLCKGSYFTLAGR---APFSRLIYPVPQHAGLGVHL----TLDLGGQ--AKFGPDTEWIATEDYTLD----------------------------------PRRADVFYAAVRSYWPALPDGALAPGYTGIRPKISGPHEPAAD-FAIAGPASHGVAGLVNLYGIESPGLTASLAIAEETLARLA-------------------------------------------- | |||||||||||||
5 | 4x9mA | 0.18 | 0.14 | 4.44 | 2.89 | CNFpred | DVLIVGGGVIGCATAYELSQY--KLKVTLVEKHHYLAQETSH--ANSGVIHTGIDPNPH----------KLTAKYNILGKKLWLTYFKRLGF---------PRQKIRTLIVAFNEMEREQLEVLKQRGIANQINEDIQMLS-KEETLKLEPYVNP-----EIVAGLKIEGSWAIDPVLASKCLALAAQQN-KVQICTNTEVTNISKQVDGTYLVWTNNE---TTPSFKVKKIIDAAGHYADYLAHLAKAD---DFEQTTRRGQYVVVTNQGELH-LNSMVFMVPTI----HGKGVIVSPML--DGNFLVGPTALDG---------------VDKEATRYITK-----------------DAPCMLTKIGKHMVPSLNINNALISFAGSRPIDKA-----TNDFIIRVAHN---DPDFVILGGMSPGLTAAPAIVREAVRLLNWKLTKKPNWN--GKYNLPWI------------------------ | |||||||||||||
6 | 4p9sA | 0.16 | 0.13 | 4.37 | 0.96 | HHsearch-2 | ETVIIGGGCVGVSLAYHLAKA--GMDVVLLEKSE-LTAGSTW--HAAGLTTYFH------PGIN-------LKKIHYDSI----KLYERLEETGQ----VVGFHQPGSIRLATTPERVDEFKYQMTRTNWHAT-E-QYII-EPEKIHELFPLLNM----DKILAGLYNPGDGHIDPYSLTMALATGARKY-GALLKYPAPVTSLKPRPDGTWDVET------PQGSVRANRIVNAAGFWAREVGKMIGL----DHPLIPVQHQYVITSTPEVKAKRELPVLRDLEGS--Y----Y--LRQERDG--LLFGPYESQEASWVAHGVPPGFGKEL-----------FESDLD-----------RITEHVEAAMEMVPVLKKADIINIVNGPITYSPDILP------MVGPH---QGVRNYWVAIGGY-GIIHAGGVGTYLSDWILHGEPPFDLIELDPNRYGK-WT-TTQYTEAKARESYGFNNIVGYR | |||||||||||||
7 | 3dmeA | 0.15 | 0.11 | 3.69 | 2.33 | Neff-PPAS | DCIVIGAGVVGLAIARALAAG--GHEVLVAEAAEGIGTGTSS--RNSEVIHAG---IYYPAD----------SLKARLCVRGKHLLYEYCAARGVP------HQRLGKLIVATSDAEASQLDSIARRAGANGV-DDLQHI-DGAAARRLEPAL-------HCTAALVSPSTGIVDSHALMLAYQGDAESD-GAQLVFHTPLIAGRVRPEGGFELDFG---GAEPMTLSCRVLINAAGLHAPGLARRIEIPRDSIPPEYLCKGSYFTLAGRAP---FSRLIYPVPQHAGLGV------HLTLDLGGQAKFGPDTEWIATEDYTLD----------------------------------PRRADVFYAAVRSYWPALPDGALAPGYTGIRPKISGPHEPAAD-FAIAGPASHGVAGLVNLYGIESPGLTASLAIAEETLARLA-------------------------------------------- | |||||||||||||
8 | 4yshA | 0.17 | 0.13 | 4.19 | 1.31 | HHsearch | DVAIVGGGVIGAAIGFELAKR--RHRVAIFEKGT-MGSGASS--AAAGMLGAQS---EFSTSSP-------LVPLALQSRALMPALAEELRRTGIDI----GLVEKGLIKLATTEEEADDLYRHYTFWRGIGE-P-VQWL-TKGEALEMEPRLAE-----ALAGAMYIPGDGQVSAPDLAAALAYAAASA-GACLYEYTEVFDIRSDSSG-HVLDT------TGGTFAAEAVVIASGAWAARLGARVGL----SLSVYPVKGECVMVRAPVPL--LQTTVFAK-N---GC----YI-VPKSGNR--LLIGATSTPG--------TFD--RRVSA-------------------------GGVMNLLHRAAHLVPDIEQAEWVASWSGIRPQTEDGLP------YLGEH---PERRGLFVAAGYRNGILLSPLTGLLVADLVERKETAFDLAPFSLTRHIG-------------------------- | |||||||||||||
9 | 3dmeA | 0.16 | 0.12 | 3.91 | 2.27 | PROSPECTOR2 | TCIVIGAGVVGLAIARALAA--GGHEVLVAEAAEGIGTGTSS--RNSEVIHAG----------IYYPADSLKARLCVRGKHLLYEYCAAR---------GVPHQRLGKLIVATSDAEASQLDSIARRAGANGVDDLQHI--DGAAARRLEP-------ALHCTAALVSPSTGIVDSHALMLAYQGDAESD-GAQLVFHTPLIAGRVRPEGGFELDF---GGAEPMTLSCRVLINAAGLHAPGLARRIGIPRDSIPPEYLCKGSYFTLAGRA---PFSRLIYPVPQHAGLGVHL------TLDLGGQAKFGPDTEWIATEDYTLDPRR----------------------------------ADVFYAAVRSYWPALPDGALAPGYTGIRPKISGPHEPAADFAIAGPA--SHGVAGLVNLYGESPGLTASLAIAEETLARLA-------------------------------------------- | |||||||||||||
10 | 4yshA | 0.17 | 0.12 | 4.01 | 3.12 | SAM | DVAIVGGGVIGAAIGFELAKR--RHRVAIFEKGT-MGSGASS--AAAGMLGAQS---EFSTSSP-------LVPLALQSRALMPALAEELRRTGI----DIGLVEKGLIKLATTEEEADDLYRHYTFWRGIGE-P-VQWL-TKGEALEMEPRLAE-----ALAGAMYIPGDGQVSAPDLAAALAYAAASA-GACLYEYTEVFDIRSDSSG-HVLDT------TGGTFAAEAVVIASGAWAARLGARVGL----SLSVYPVKGECVMVRAP---------VFA-------KNGC-YI-VPKSGNR--LLIGATSTPG--------TFD--RRVSA-------------------------GGVMNLLHRAAHLVPDIEQAEWVASWSGIRPQTEDGLP------YLGEH---PERRGLFVAAGYRNGILLSPLTGLLVADLVERKETAFDLAPFSLTRH---------------------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |