Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220
| | | | | | | | | | | |
| Seq | PSHTIVSREEWREARTAHLAKEKEFTRLRDQLSAERRALPWVKVDKTYVFEGPAGKTTLAELFDGRRQLIVYHFMFGPGWEEGCPSCSFLADHIDGAVTHLAHRDVTLLAVSRAPLRQIEAFKKRMGWRFTWVSSHGTDFNFDYHVSFTKDQTAKGAVDYNFAPREFPSEEAPGISVFYKNERGEVFHTYSAYARGLDMLVGAYNYLDLAPKGRDEDALAFTMAWVRHHDRY |
1 | 5epfA | 0.12 | 0.08 | 2.87 | 1.64 | SPARKS-K | | -------------------------------------HMKTGDTVADFELPDQTGPRRLSVLLSDGP-VVLFFY-----PAAMTPGCTKEACHFRDLAKEFAEVRASRVGISTDPVRKQAKFAEVRRFDYPLLSDAQGTVAAQFGVKRGLLGKLMP----------------VKRTTFVIDTDRKVLDVISSEFSMDAHADKALATLRAIRS-------------------- |
2 | 5epfA | 0.13 | 0.08 | 2.85 | 1.97 | FFAS-3D | | --------------------------------------MKTGDTVADFELPDTGTPRRLSV-LLSDGPVVLF---FYPAA--MTPGCTKEACHFRDLAKEFAEVRASRVGISTDPVRKQAKFAEVRRFDYPLLSDAQGTVAAQFGVKRGLLGKLMPVKR----------------TTFVIDTDRKVLDVISSEFSMDAHADKALATLR------------------------ |
3 | 2v2gA | 0.09 | 0.07 | 2.61 | 2.31 | HHpred | | -------------------------------------GITLGEVFPNFEADSTIGKLKFHDWLGNS-WGVLFSH-----PRDFTPVSTTELGRVIQLEGDFKKRGVKLIALSCDNVADHKEWSEDGDMPYPIIADETRELAVKLGMVDPDERTS-------------TGMPLTCRAVFIIGPDKKLKLSILYPATTGRNFSEILRVIDSLQLTAQK-KVATPADWQPGDRC- |
4 | 5epfA | 0.12 | 0.08 | 2.87 | 1.43 | MUSTER | | -------------------------------------HMKTGDTVADFELPDQTGTRRLSVLLSDGP-VVLFFY-----PAAMTPGCTKEACHFRDLAKEFAEVRASRVGISTDPVRKQAKFAEVRRFDYPLLSDAQGTVAAQFGVKRGLLGKLMPVKR----------------TTFVIDTDRKVLDVISSEFSMDAHADKALATLRAIRS-------------------- |
5 | 5b6mA | 0.14 | 0.10 | 3.41 | 1.63 | CNFpred | | -------------------------------------GLLLGDVAPNFEANTTVGRIRFHDFLGDSWGILFSHPRD------FTPVCTTELGRAAKLAPEFAKRNVKLIALSIDSVEDHLAWSKDINLPFPIIDDRNRELAILLGMLDPAEKD---------------GMPVTARVVFVFGPDKKLKLSILYPGRNFDEILRVVISLQLTAE----KRVATPVDWKDGDSVM |
6 | 1xccA | 0.09 | 0.06 | 2.49 | 0.70 | HHsearch-2 | | -------------------------------------GYHLGATFPNFTAKASGGDFELYKYIEN-SWAILFSH-----PNDFTPVCTTELAELGKMHEDFLKLNCKLIGFSCNSKESHDKWIEDNKWEIPIVCDESRELANKLKIMDEQEKDI-------------TGLPLTCRCLFFISPEKKIKATVLYPATNAHEILRV---LKSLQLTYTT-PVATPVNWNEGDKCC |
7 | 3drnA | 0.15 | 0.10 | 3.33 | 1.51 | Neff-PPAS | | --------------------------------------VKVGDKAPLFEGIADNGEKISLSDYIGKHNIVLYFY-----PKDDTPGSTREASAFRDNWDLLKDYDVVVIGVSSDDINSHKRFKEKYKLPFILVSDPDKKIRELYGA---------------------KGFILPARITFVIDKKGIIRHIYNSQMNPANHVNEALKALKQIKEEEIS---------------- |
8 | 1xccA | 0.09 | 0.06 | 2.48 | 1.11 | HHsearch | | -------------------------------------GYHLGATFPNFTAKASGGDFELYKYIEN-SWAILFSH-----PNDFTPVCTTELAELGKMHEDFLKLNCKLIGFSCNSKESHDKWIEDNKWEIPIVCDESRELANKLKIMDEQEKDI-------------TGLPLTCRCLFFISPEKKIKATVLYPATNAHEILR---VLKSLQLTYTT-PVATPVNWNEGDKC- |
9 | 2v2gA | 0.10 | 0.08 | 2.84 | 1.71 | PROSPECTOR2 | | G-------------------------------------ITLGEVFPNFEADSTIGKLKFHDWL-GNSWGVLFSHP-----RDFTPVSTTELGRVIQLEGDFKKRGVKLIALSCDNVADHKEWSEDVDMPYPIIADETRELAVKLGMVDPD-------------ERTSTGMPLTCRAVFIIGPDKKLKLSILTTGRNFSEILRVIDSLQLTAQKK----VATPADWQPGDRKS |
10 | 1xccA | 0.09 | 0.06 | 2.48 | 1.91 | SAM | | --------------------------------------YHLGATFPNFTAKASGGF-ELYKY-IENSWAILFSH-----PNDFTPVCTTELAELGKMHEDFLKLNCKLIGFSCNSKESHDKWIEDNKWEIPIVCDESRELANKLKIMDEQEKDI-------------TGLPLTCRCLFFISPEKKIKATVLYPATTGRNAHEILRVLKSLQLTYTT-PVATPVNWNEGDK-- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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