>PF05947 (622 residues) MDPRLLEYYNRELQHLREVGGEFAKEFPKIAGRLGLEGFECADPYVERLLEGFGFLAARV QLKLDAEFPRFTQHLLEIIYPHYLAPTPSMLVAQFQPDPTEGALDQGFVIPRGSELRSLL GKGDQTPCEYRTAHEVTLWPVELTEVQYFAGKEPVALLDLPDLNKVRAGIRLRLRTTLPG LSFDKLALERLTLFLNGSDELPMRVYEQLLGNAVMVVARPGQRPAPWHEVVPGECIRRLG FADEQALLPYAPPSFRGYRLLHEYFAFPQRFLFVELAGLGAAVRRCADSELEILILLNRA NAALENGLEAEHFALFCAPATNLFPKRADRIHLSEQVAEHHVVPDRTRPMDFEVYQVNGV TGIGAEGEEQEFLPFYAAYDRLDQRERRAFYTVRRLPRQLSSQQRRSGPRSSYIGSEVFL SLVDAGEAPYRSNLKQLAVTVLCTNRDLPLHMPIGLGETDFSMTSGAPVGSVRCLAGPTK PRPSHAHGDTAWRLISHLSLNYLSLADTDSRQGAVALRELLALYGDLAEAATRKQIDGIR SVRAAPITRRAPVAGPIAFARGLEVNVTLDEGAFEGAGIFLLGAVLEQFFAKYASINSFT ETVVHSSERGEIVRWPARIGKR |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 500 520 540 560 580 600 620 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | MDPRLLEYYNRELQHLREVGGEFAKEFPKIAGRLGLEGFECADPYVERLLEGFGFLAARVQLKLDAEFPRFTQHLLEIIYPHYLAPTPSMLVAQFQPDPTEGALDQGFVIPRGSELRSLLGKGDQTPCEYRTAHEVTLWPVELTEVQYFAGKEPVALLDLPDLNKVRAGIRLRLRTTLPGLSFDKLALERLTLFLNGSDELPMRVYEQLLGNAVMVVARPGQRPAPWHEVVPGECIRRLGFADEQALLPYAPPSFRGYRLLHEYFAFPQRFLFVELAGLGAAVRRCADSELEILILLNRANAALENGLEAEHFALFCAPATNLFPKRADRIHLSEQVAEHHVVPDRTRPMDFEVYQVNGVTGIGAEGEEQEFLPFYAAYDRLDQRERRAFYTVRRLPRQLSSQQRRSGPRSSYIGSEVFLSLVDAGEAPYRSNLKQLAVTVLCTNRDLPLHMPIGLGETDFSMTSGAPVGSVRCLAGPTKPRPSHAHGDTAWRLISHLSLNYLSLADTDSRQGAVALRELLALYGDLAEAATRKQIDGIRSVRAAPITRRAPVAGPIAFARGLEVNVTLDEGAFEGAGIFLLGAVLEQFFAKYASINSFTETVVHSSERGEIVRWPARIGKR | |||||||||||||||||||
1 | 6giyA | 0.28 | 0.26 | 7.96 | 4.41 | SPARKS-K | ---LTLRYFDAEMRYLREAGKAFAQAHPDRAAMLDLDKAGTPDPCVERLFEGFAFSMGRLRQKIDDDLPELTESLVSMLWPHYLRTIPSLSVVALTPRLS--VMKMAETVPAGLEVTSRPVGPGNTVCRYRTTRAIPLNPLAVE------------KVVMTTEPDGRSVLKIGFA-CSELADWSQVDLHRLSLYLAAEAPVSSTLHLMMTKRLAALYLRLPGNDERIRI---DGWFSPGGFAEEDRLWPKGDSAFSGYQLLLEYFTFREKFMFVHLNGLENVSLPAGISGFDLEVVLSQPWPADLPV-TDDALCLHCVPVINLFTLEADPLIINGLESEYLLRPKRLQDGYTEIYSVDAVTGSGRTGS-AEYVPFTSFRHRGGMLRPERYY------HTRVKRGVTGMYDT-------WLILGGQRWEADRPERETLSLRITGTNGQLPRRALQST-LLDRCEQVLQAPVSVRNLCKPTLPVYPPTEDRFHWRVMSHLGTGFLNM-----LSSAEVLRGTLALYNWRDDELNHRRLDAILAVQHHRIQRFEKGF----LLRGLDVEVTLDGNGFAGEGIHLFGEMLNRFLALYADMNQFNQLTLIVQPEGKCIRWKENHNPR | |||||||||||||
2 | 6giyA | 0.28 | 0.26 | 7.91 | 4.97 | FFAS-3D | ----TLRYFDAEMRYLREAGKAFAQAHPDRAAMLDLDKAGTPDPCVERLFEGFAFSMGRLRQKIDDDLPELTESLVSMLWPHYLRTIPSLSVVALTPRL--SVMKMAETVPAGLEVTSRPVGPGNTVCRYRTTRAIPLNPLAVEK------------VVMTTEPDGRSVLKIGFA-CSELADWSQVDLHRLSLYLAAEAPVSSTLHLMMTKRLAALYLRLPGNDERI---RIDGWFSPGGFAEEDRLWPKGDSAFSGYQLLLEYFTFREKFMFVHLNGLENVSLPAGISGFDLEVVLSQPWP-ADLPVTDDALCLHCVPVINLFTLEADPLIINGLESEYLLRPKRLQDGYTEIYSVDAVTGSGRTGSA-EYVPFTSFRHRGRHDAPERYYHTRVKRGVTG-------------MYDTWLILGGQRWEARMPERETLSLRITGTNGQLPRRALQS-TLLDRCEQVLQAPVSVRNLCKPTLPVYPPTEDRFHWRVMSHLGTGFLNMLS-----SAEVLRGTLALYNWRDDELNHRRLDAILAVQHHRIQRFEKGF----LLRGLDVEVTLDGNGFAGEGIHLFGEMLNRFLALYADMNQFNQLTLIVQPEGKCIRWKENHNPR | |||||||||||||
3 | 6giyA | 0.28 | 0.26 | 8.00 | 17.60 | HHpred | ---LTLRYFDAEMRYLREAGKAFAQAHPDRAAMLDLDKAGTPDPCVERLFEGFAFSMGRLRQKIDDDLPELTESLVSMLWPHYLRTIPSLSVVALTPRLS--VMKMAETVPAGLEVTSRPVGPGNTVCRYRTTRAIPLNPLAVEKVVMTTEP------------DGRSVLKIGFACS-ELADWSQVDLHRLSLYLAAEAPVSSTLHLMMTKRLAALYLRLPGND-ERIR-IDG-WFSPGGFAEEDRLWPKGDSAFSGYQLLLEYFTFREKFMFVHLNGLENVSLPAGISGFDLEVVLSQPWP-ADLPVTDDALCLHCVPVINLFTLEADPLIINGLESEYLLRPKRLQDGYTEIYSVDAVTGSGRT-GSAEYVPFTSFRHRGGMDAPERYYHTRVKRGV-------------TGMYDTWLILGGQRWEADRPERETLSLRITGTNGQLPRRALQST-LLDRCEQVLQAPVSVRNLCKPTLPVYPPTEDRFHWRVMSHLGTGFLNMLS-----SAEVLRGTLALYNWRDDELNHRRLDAILAVQHHRIQRFEKG----FLLRGLDVEVTLDGNGFAGEGIHLFGEMLNRFLALYADMNQFNQLTLIVQPEGKCIRWKENHNPR | |||||||||||||
4 | 6giyA | 0.28 | 0.26 | 8.00 | 4.67 | MUSTER | ---LTLRYFDAEMRYLREAGKAFAQAHPDRAAMLDLDKAGTPDPCVERLFEGFAFSMGRLRQKIDDDLPELTESLVSMLWPHYLRTIPSLSVVALTPRLSV--MKMAETVPAGLEVTSRPVGPGNTVCRYRTTRAIPLNPLAVEKVVMTTEP------------DGRSVLKIGFACSEL-ADWSQVDLHRLSLYLAAEAPVSSTLHLMMTKRLAALYLRLPGNDERI--RIDG-WFSPGGFAEEDRLWPKGDSAFSGYQLLLEYFTFREKFMFVHLNGLENVSLPAGISGFDLEVVLSQPWP-ADLPVTDDALCLHCVPVINLFTLEADPLIINGLESEYLLRPKRLQDGYTEIYSVDAVTGSGRTGS-AEYVPFTSFRHRGGMLAPERYYHTRVKRGVT-------------GMYDTWLILGGQRWEARMPERETLSLRITGTNGQLPRRALQS-TLLDRCEQVLQAPVSVRNLCKPTLPVYPPTEDRFHWRVMSHLGTGFLNMLS-----SAEVLRGTLALYNWRDDELNHRRLDAILAVQHHRIQRFEKG----FLLRGLDVEVTLDGNGFAGEGIHLFGEMLNRFLALYADMNQFNQLTLIVQPEGKCIRWKENHNPR | |||||||||||||
5 | 6gj1A | 0.28 | 0.26 | 8.00 | 3.77 | CNFpred | ----TLRYFDAEMRYLREAGKAFAQAHPDRAAMLDLDKAGTPDPCVERLFEGFAFSMGRLRQKIDDDLPELTESLVSMLWPHYLRTIPSLSVVALTPRL--SVMKMAETVPAGLEVTSRPVGPGNTVCRYRTTRAIPLNPLAVEKVVMTTEP------------DGRSVLKIGFACSE-LADWSQVDLHRLSLYLAAEAPVSSTLHLMMTKRLAALYLRLPGND--ERIRID-GWFSPGGFAEEDRLWPKGDSAFSGYQLLLEYFTFREKFMFVHLNGLENVSLPAGISGFDLEVVLSQPWPADL-PVTDDALCLHCVPVINLFTLEADPLIINGLESEYLLRPKRLQDGYTEIYSVDAVTGSGR-TGSAEYVPFTSFRHRLRHDAPERYYHTRVKRGVT-------------GMYDTWLILGGQRWEADRMPRETLSLRITGTNGQLPRRALQSTL-LDRCEQVLQAPVSVRNLCKPTLPVYPPTEDRFHWRVMSHLGTGFLNML-----SSAEVLRGTLALYNWRDDELNHRRLDAILAVQHHRIQRFE----KGFLLRGLDVEVTLDGNGFAGGDIHLFGEMLNRFLALYADMNQFNQLTLIVQPEGKCIRWKENHNPR | |||||||||||||
6 | 6giyA | 0.28 | 0.26 | 7.96 | 6.73 | HHsearch-2 | ---LTLRYFDAEMRYLREAGKAFAQAHPDRAAMLDLDKAGTPDPCVERLFEGFAFSMGRLRQKIDDDLPELTESLVSMLWPHYLRTIPSLSVVALTPRLS--VMKMAETVPAGLEVTSRPVGPGNTVCRYRTTRAIPLNPLAVEKVVMTTEP------------DGRSVLKIGFACS-ELADWSQVDLHRLSLYLAAEAPVSSTLHLMMTKRLAALYLRLPGN-DERIR-IDG-WFSPGGFAEEDRLWPKGDSAFSGYQLLLEYFTFREKFMFVHLNGLENVSLPAGISGFDLEVVLSQPWP-ADLPVTDDALCLHCVPVINLFTLEADPLIINGLESEYLLRPKRLQDGYTEIYSVDAVTGSGRT-GSAEYVPFTSFRHRGGMDAPERYYHTRVKRGV-------------TGMYDTWLILGGQRWEADRPERETLSLRITGTNGQLPRRALQST-LLDRCEQVLQAPVSVRNLCKPTLPVYPPTEDRFHWRVMSHLGTGFLNMLS-----SAEVLRGTLALYNWRDDELNHRRLDAILAVQHHRIQRFEK----GFLLRGLDVEVTLDGNGFAGGDIHLFGEMLNRFLALYADMNQFNQLTLIVQPEGKCIRWKENHNPR | |||||||||||||
7 | 6giyA | 0.28 | 0.26 | 8.05 | 9.49 | Neff-PPAS | ---LTLRYFDAEMRYLREAGKAFAQAHPDRAAMLDLDKAGTPDPCVERLFEGFAFSMGRLRQKIDDDLPELTESLVSMLWPHYLRTIPSLSVVALTPRLS--VMKMAETVPAGLEVTSRPVGPGNTVCRYRTTRAIPLNPLAVEKVVMTTEP------------DGRSVLKIGFACS-ELADWSQVDLHRLSLYLAAEAPVSSTLHLMMTKRLAALYLRLPGNDERIRI---DGWFSPGGFAEEDRLWPKGDSAFSGYQLLLEYFTFREKFMFVHLNGLENVSLPAGISGFDLEVVLSQPWPA-DLPVTDDALCLHCVPVINLFTLEADPLIINGLESEYLLRPKRLQDGYTEIYSVDAVTGSGRTGS-AEYVPFTSFRHRGGMLRHERYYHTRVKRG-------------VTGMYDTWLILGGQRWEADRPERETLSLRITGTNGQLPRRALQS-TLLDRCEQVLQAPVSVRNLCKPTLPVYPPTEDRFHWRVMSHLGTGFLNMLS-----SAEVLRGTLALYNWRDDELNHRRLDAILAVQHHRIQRFEKG----FLLRGLDVEVTLDGNGFAGEGIHLFGEMLNRFLALYADMNQFNQLTLIVQPEGKCIRWKENHNPR | |||||||||||||
8 | 6giyA | 0.28 | 0.26 | 7.91 | 10.68 | HHsearch | ---LTLRYFDAEMRYLREAGKAFAQAHPDRAAMLDLDKAGTPDPCVERLFEGFAFSMGRLRQKIDDDLPELTESLVSMLWPHYLRTIPSLSVVALTPRLS--VMKMAETVPAGLEVTSRPVGPGNTVCRYRTTRAIPLNPLAVEKVVMTTEP------------DGRSVLKIGFACS-ELADWSQVDLHRLSLYLAAEAPVSSTLHLMMTKRLAALYLRLPGN-DERIR-IDG-WFSPGGFAEEDRLWPKGDSAFSGYQLLLEYFTFREKFMFVHLNGLENVSLPAGISGFDLEVVLSQPWP-ADLPVTDDALCLHCVPVINLFTLEADPLIINGLESEYLLRPKRLQDGYTEIYSVDAVTGSGRT-GSAEYVPFTSFRHRGGMDAPERYYHTRVKRGV-------------TGMYDTWLILGGQRWEADRPERETLSLRITGTNGQLPRRALQST-LLDRCEQVLQAPVSVRNLCKPTLPVYPPTEDRFHWRVMSHLGTGFLNMLS-----SAEVLRGTLALYNWRDDELNHRRLDAILAVQHHRIQRFEK----GFLLRGLDVEVTLDGNGFAGGDIHLFGEMLNRFLALYADMNQFNQLTLIVQPEGKCIRWKENHNP- | |||||||||||||
9 | 6giyA | 0.28 | 0.26 | 7.91 | 4.51 | PROSPECTOR2 | L---TLRYFDAEMRYLREAGKAFAQAHPDRAAMLDLDKAGTPDPCVERLFEGFAFSMGRLRQKIDDDLPELTESLVSMLWPHYLRTIPSLSVVALTPRLS--VMKMAETVPAGLEVTSRPVGPGNTVCRYRTTRAIPLNPLAVEKVVMTTEP------------DGRSVLKIGFA-CSELADWSQVDLHRLSLYLAAEAPVSSTLHLMMTKRLAALYLRLPGNDERIR---IDGWFSPGGFAEEDRLWPKGDSAFSGYQLLLEYFTFREKFMFVHLNGLENVSLPAGISGFDLEVVLSQPWP-ADLPVTDDALCLHCVPVINLFTLEADPLIINGLESEYLLRPKRLQDGYTEIYSVDAVTGSGRTGS-AEYVPFTSFRHRGGMLRPERYYHTRVKRGV-------------TGMYDTWLILGGQRWEADMPERETLSLRITGTNGQLPRRALQST-LLDRCEQVLQAPVSVRNLCKPTLPVYPPTEDRFHWRVMSHLGTGFLNMLS-----SAEVLRGTLALYNWRDDELNHRRLDAILAVQHHRIQRFEKGF----LLRGLDVEVTLDGNGFAGEDIHLFGEMLNRFLALYADMNQFNQLTLIVQPEGKCIRWKENHNPR | |||||||||||||
10 | 6giyA | 0.28 | 0.26 | 7.96 | 8.17 | SAM | ----TLRYFDAEMRYLREAGKAFAQAHPDRAAMLDLDKAGTPDPCVERLFEGFAFSMGRLRQKIDDDLPELTESLVSMLWPHYLRTIPSLSVVALTPRLS--VMKMAETVPAGLEVTSRPVGPGNTVCRYRTTRAIPLNPLAVEKVVMTTEP------------DGRSVLKIGFACS-ELADWSQVDLHRLSLYLAAEAPVSSTLHLMMTKRLAALYLRLPGN-DERIR-IDG-WFSPGGFAEEDRLWPKGDSAFSGYQLLLEYFTFREKFMFVHLNGLENVSLPAGISGFDLEVVLSQPWP-ADLPVTDDALCLHCVPVINLFTLEADPLIINGLESEYLLRPKRLQDGYTEIYSVDAVTGSGRT-GSAEYVPFTSFRHRGGHDAPERYYHTRVKRGV-------------TGMYDTWLILGGQRWEADRPERETLSLRITGTNGQLPRRALQSTL-LDRCEQVLQAPVSVRNLCKPTLPVYPPTEDRFHWRVMSHLGTGFLNMLS-----SAEVLRGTLALYNWRDDELNHRRLDAILAVQHHRIQRFEK----GFLLRGLDVEVTLDGNGFAGGDIHLFGEMLNRFLALYADMNQFNQLTLIVQPEGKCIRWKENHNPR | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |