>PF05940 (372 residues) FALGFRPFFLAAGLYAVLMMALWLLVLNGAVIPGELLPLVWHGHEMVFGFAVSVIAGFLL TAAQNWTGLRTPSGRPLAALFLLWLAGRLGFLIPGLPTGLVALIDLAFLPVLAVTLAVPI LRTKQLHNYPFPILLLALAAANALVHADALHWMSGTARPGLHLGVYVVIMMITAMGGRVI PSFTDNKLRTRARRWTIIEWLVPAATLLALIAALVAPTSPVTALLAAVAAAAHAIRLAGW YTPKFWSVPLLWILHLGYAWIPLGFALLALSAAGWNAAAGSALHAFTAGAIGALTLGMMA RVSLGHTGRPLEPPPIMTLAFIAINLAALARVALPLLFPAAYTQVMTVAGLVWIAAFGLF VAMYAPMLLRPR |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | FALGFRPFFLAAGLYAVLMMALWLLVLNGAVIPGELLPLVWHGHEMVFGFAVSVIAGFLLTAAQNWTGLRTPSGRPLAALFLLWLAGRLGFLIPGLPTGLVALIDLAFLPVLAVTLAVPILRTKQLHNYPFPILLLALAAANALVHADALHWMSGTARPGLHLGVYVVIMMITAMGGRVIPSFTDNKLRTRARRWTIIEWLVPAATLLALIAALVAPTSPVTALLAAVAAAAHAIRLAGWYTPKFWSVPLLWILHLGYAWIPLGFALLALSAAGWNAAAGSALHAFTAGAIGALTLGMMARVSLGHTGRPLEPPPIMTLAFIAINLAALARVALPLLFPAAYTQVMTVAGLVWIAAFGLFVAMYAPMLLRPR | |||||||||||||||||||
1 | 3mk7A | 0.12 | 0.12 | 4.34 | 1.90 | SPARKS-K | SYKVVRQFAIMTVVWGIVGMGLGVFIAAQLAWLPWTSLRPLHTNAVIFAFGGCALFATSYYSVQRTCQTTLFAPKLAAFTFWGWQLVILLAAISPLGFWPIDILITIVWVAYAVVFFGTLAKRKVKHIYVGNWFFGAFILTVAILHVVNNATDAMVQWWYGHNAVGFLTAGFLGIMYYFVPKQAERPVYSYRLSIVHFWALITVYIWAGPHHLSLGMVMSLILLAPSWGGMINGMMTLSGAWHKLRSDPILRFLVVSLAFYGMSTFEGPMMAIKTVNALSGHVHAGALGWVAMVSIGALYHLVPKVFGRQMHSIGLINTHFWLATIGTVLYIASMWVNSHPGFVVRMIGGAIFFAGMLVMAYNTWRTVQAAK | |||||||||||||
2 | 3ayfA2 | 0.11 | 0.11 | 3.88 | 1.56 | FFAS-3D | ------KYFVVVSALFFVQTMFGALLAHYYTEPDSFFAKGYHLQLAIFWIATAWL-GMGIFIAPLVGGQEPKKQGLLVDLFWALVVLVGGSMIGQWLGVIILVVGMLLWLFIVFRGVKRGLKRESDKGGLIHLLFYSAIAVPFFYIFAFFIQPDTNFTMADFWRWWIIHLWVEGIFEVFAVVVIGFLLVQLRLVTKKSTVRALYFQFTILLGSGVNGSPEVWIALGAVFSALEVIPLTLLILEAYYKATFWFLISTAIWNLVFGFLIAVSYFEHGQFLTPAHGHAAMMGVYGMFAIAVLLYSLRNIVKPEAWNDKWLKFSCWMLNIGLAGMVVITLLPVGILQMKEAVPDTIFLIGVVALLVFAIKALFHLR | |||||||||||||
3 | 6hwhV | 0.14 | 0.14 | 4.68 | 1.03 | HHpred | TTTDHMMYVVACFIFFFIGGLMALLLRTELAVPGQYQLFTMHGTVMLLFYATPIVFGFANLVVPLQIGAPVAFPRLNALSFWLFLFGASIALGGFALWIFGLIVGGLGTILGAVNMITTVVCMRAPGMPIFTWVIVLVAFSALFGLAADRNGDPMWEWFFGHPEVYIIALPFFGIVTEIFPVFSRKPVFG-----YTTLVYATI--SIGALSIAVWVLLPMTFMIAVPTGIKFVNWIGMWKGQLTFETPMLFSVGFLVTFLLGGLTGVILPPLDDSYFVVAHFHYVLFGTIVFATYAGVYFWFPKMTGRL-LDDRLGKLHFWLTLIGFHTTFLVHHWLLTTLNIVSTIGSFILGVSMLPFVWNVFKSWRYGE | |||||||||||||
4 | 3l1lA | 0.11 | 0.10 | 3.80 | 1.18 | MUSTER | ASTGG-IYGWLVTIIGALGLSMVYAKMSFLDPSPCFGPFLGYQTNVLYWLACWIGNIAMVVIGSYFFPLKDPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWFRGETAIQSTLNVTLWSVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMATAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDPIFARVNKAGTPVAGLIIVGILMTIFQLSSISPNATKE---FGLVSSVSVIFTLVPYLYTCAALLLL----GHGHFGKARPAYLAVTTIAFLYCIWAVVGSG---AKEVMWSFVTLMVITAMYALNYNRLHKNPY | |||||||||||||
5 | 3rkoB | 0.12 | 0.12 | 4.16 | 1.83 | CNFpred | -------SAIVGVGSVGLAALVTAFIGVDFF-FNIGFNLVLDGLSLTMLSVVTGVGFLIHMYASWYMRGE-EGYSRFFAYTNLFIASMVVLVLA--DNLLLMYLGWEGVGLCSYLLIGFYYTDPKNAAAMKAFVVTRVGDVFLAFALFILYNGTLNFREMV-MLMWATLMLLGGAVGKSAQLPLQTWLADAMAGPTPVSALIHAATMVTAGVYLIARTHGLFLHLVGIVGAVTLLLAGFAALQTDIKRVLAYSTMSQIGYMFLALGVQAWDAAIFHLMTHAFFKALLFLASGSVILACHHEQNIFKMGGLRKSIPLVYLCFLVGGAALSAGFFSKDEILAGAINLMVAGLVGAFMTSLYTFRMIFIVFHGKE | |||||||||||||
6 | 4xydA | 0.11 | 0.10 | 3.81 | 1.60 | HHsearch-2 | SQSIALVYFAVALGLFAIQVSGGLLLGYVSPEILPFIVRMLHTNSLIV-WLLLGFMGAAYFVIPEESEREIHSPLLAYLQLAIMVLGTLGVVVTYFNPVWVKMGIVVAALIFMYNISMTVLQGR-K-T-AITN-VLLLGLWGLTFLFAFYNSNLALDKYVVHLWVEGWELVMASVLAFLMLKLTGVDREII---EKWLYLIVATA-LFSGILGGHGTPQWIGSLEVVPFFGMMAFFVMVWKGRKDHPNKALLWSLGCATLAFFGVWGFLHHGINGTQITAAHGHLAFFGAYVSLNLAIFSYAFPILRKRDPYNQVLNMASFWLMAGGMTFMTFVLTFAATIFYWMRFGSGIAVVLGALLFIYAVAVPRKEII | |||||||||||||
7 | 5aymA | 0.09 | 0.09 | 3.31 | 1.72 | Neff-PPAS | -LRIETQLLLGRLLTRSGDQAWDFVVPFALLVIFPGKLQVAAFYYLIVKIGTFLLTPSSGKWIDTHPRIQVVKWGVWLQFFAILAGMVFFGMLDGIALALSGVMASLGSQITDISVGNDLAPSPEKLTHFNSWLRRIDLATEVGAPILAGALFPLAGLFLIGLWNLVSFVPEYFLLRNVIQRSGLKIKVLGSFSDPIFWLILSYALLWLSVLSPHGPETEIGLFRGLGAVFGLISTVSFPYLVRRLGLISSSRWHLGFQGVTLGIAVTAFAMGSTASVYVFLGCILLSRVGLYGFSNGEFELRQRLIPEGRRGELNSLSSLTTTSATLILFSAGSLLPQTEDFKYLVYVSLAAVLLANVVFIKWSSR----- | |||||||||||||
8 | 4xydA | 0.11 | 0.10 | 3.80 | 2.18 | HHsearch | SQSIALVYFAVALGLFAIQVSGGLLLIYVSPEILPFIVRMLHTNSLIV-WLLLGFMGAAYFVIPEESEREIHSPLLAYLQLAIMVLGTLGVVVTYFNPVWVKMGIVVAALIFMYNISMTVLQGR-K-T-AITN-VLLLGLWGLTFLFAFYNSNLALDKYVVHLWVEGWELVMASVLAFLMLKLTGVDRE-------IIEKWLYLIVATALFSGILGTPQWIGSLEVVPFFGMMAFAFMVWKGRKDHPNKAALWSLGCATLAFFGVWGFLHHGINGTQITAAHGHLAFFGAYVSLNLAIFSYAFPILRKRDPYNQVLNMASFWLMAGGMTFMTFVLTFAATIFYWMRFGSGIAVVLGALLFIYAVAVPRKEI- | |||||||||||||
9 | 4xydA | 0.12 | 0.12 | 4.09 | 1.44 | PROSPECTOR2 | MKYQSLVYFAVALGLFAIQVLLLGWIYVSPNFLSEILPRMLHTNSLIV-WLLLGFMGAAYFVIPEESEREIHSPLLAYLQLAIMVLGTLGVVEFLEQPVWVKMGIVVAALIFMYNISMTVL---QGRKTAITNVLLLGLWGLTLLFLFAFYNPSNLALDKMYWWYVVWELVMASVLAFLMLKLTG-------VDREIIEKWLYLIVATALFSGILGTPGYWQWIGSFFGMMAFAFVMVWKGRKDHPNKAALLWSLGCATLAFFGAGVWGFYYTHGTQITAAHGHLAFFGAYVSLNLAIFSYAFPILRKRDPYNQVLNMASFWLMAGGMTFMTFVVQDAITIFYWMRFGSGIAVVLGALLFIYAVAVPRKEII | |||||||||||||
10 | 3mk7A | 0.12 | 0.11 | 4.03 | 0.85 | SAM | -----RQFAIMTVVWGVFIAAQLAWPFLNFDPWTSFRLRPLHTNAVIFAFGGCALFATSYYSVQRTCQTTLFAPKLAAFTFWGWQLVILLAAISL-LEWPIDILITIVWVAYAVVFFGTLAKRKVKHIYVGNWFFGAFILTVALYSLYAGATDAMVQWWYGHNAVGFFLTAFLGIMYYFVPKQAERPVYSYSIVHFWALITVYIWAGPHHLHYTALPDWVMSLILLAPSWGGMINGMMTLSGKLRSDPILRFLVVSLAFYGMSTFEGPMMAIKT-TDWTIGHVHAGALGWVAMVSIGALYHLVPKVFGRQMHSIGLINTHFWLATIGTVLYIASMWV-NGIAQGVRMIGGAIFFAGMLVMAYNTWRTVQAAK | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |