>PF05934 (549 residues) CSLLLCECLLLVAGYAHDDDWIDPTDMLNYDAASGTMRKSQAKYGISGEKDVSPDLSCAD EISECYHKLDSLTYKIDECEKKKREDYESQSNPVFRRYLNKILIEAGKLGLPDENKGDMH YDAEIILKRETLLEIQKFLNGEDWKPGALDDALSDILINFKFHDFETWKWRFEDSFGVDP YNVLMVLLCLLCIVVLVATELWTYVRWYTQLRRVLIISFLFSLGWNWMYLYKLAFAQHQA EVAKMEPLNNVCAEKMDWTGSIWEWFRSSWTYKDDPCQKYYELLLVNPIWLVPPTKALAV TFTTFVTEPLKHIGKGTGEFIKALMKEIPALLHLPVLIIMALAILSFCYGAGKSVHVLRH IGGPEREPPQALRPWDRRRQEEIDYRPDGGAGDADFHYRGQMGPIEQGPYAKTYEGRREI LRERDVDLRFQTGNKSPEVLRAFDVPDAEAREHPTVVPSHKSPVLDTKPKETGGILGEGT PKESSTESSQSAKPVSGQDTSGNTEGSPAAEKAQLKSEAAGSPDQGSTYSPARGVAGPRG QDPVSSPCG |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 500 520 540 | | | | | | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | CSLLLCECLLLVAGYAHDDDWIDPTDMLNYDAASGTMRKSQAKYGISGEKDVSPDLSCADEISECYHKLDSLTYKIDECEKKKREDYESQSNPVFRRYLNKILIEAGKLGLPDENKGDMHYDAEIILKRETLLEIQKFLNGEDWKPGALDDALSDILINFKFHDFETWKWRFEDSFGVDPYNVLMVLLCLLCIVVLVATELWTYVRWYTQLRRVLIISFLFSLGWNWMYLYKLAFAQHQAEVAKMEPLNNVCAEKMDWTGSIWEWFRSSWTYKDDPCQKYYELLLVNPIWLVPPTKALAVTFTTFVTEPLKHIGKGTGEFIKALMKEIPALLHLPVLIIMALAILSFCYGAGKSVHVLRHIGGPEREPPQALRPWDRRRQEEIDYRPDGGAGDADFHYRGQMGPIEQGPYAKTYEGRREILRERDVDLRFQTGNKSPEVLRAFDVPDAEAREHPTVVPSHKSPVLDTKPKETGGILGEGTPKESSTESSQSAKPVSGQDTSGNTEGSPAAEKAQLKSEAAGSPDQGSTYSPARGVAGPRGQDPVSSPCG | |||||||||||||||||||
1 | 3jd8A | 0.08 | 0.07 | 2.85 | 1.03 | SPARKS-K | FSLVFITACSSGLVFVRVTTWSAPHFGPFFRTRAPLTDKHIYQPYPSGADVPFGPPLDIQILHQVLDLQIAIEQDIHSVLDHKKGDDFFVYADYHT-HFLYCVRAPASLNDTSLLHDPCALVITFPVNN---------YYNDTEKLQRAQAWEKEFINFVKNYKNPNLTISFTAERSESDSDVFTVVISYAIMFLYISLALCRRLLVDSKVSLGIAGILIVLVFSYIGLPLTLIVIEVIPFLVLAVGVDN----IFILVQAYQRDERLQGETLDQQLGRVLGEVAP-SMFLSSFSETVAFFLGALSVMPAVHTFSLFAGLAVFIDFRFFKNSYSPLLPIVIAIFVGVLSFSIAVLNKV-----DIGLDQSLSMPDDSYMVDYFKSI------SQYLHAGPPVYFVLEEGHDYTSSKGQNMVCGGMGC---NNDSLVQQIFNAAQLDNYTRIGFAP---SSWIDDYFDWVKPQSSCCRVPEGKQQGGDFMRFLPMFLSDNPNPKCGKG---GHAAYSSAVNILLGHGTRVGATYFMTYHTVLQTSADFID | |||||||||||||
2 | 6me6A | 0.12 | 0.07 | 2.51 | 1.01 | FFAS-3D | --------------------------------------------------------------ADLEDNWETLNDNLKVIEK-------ADNAAQVKDALTKMALDAQKATPPKDSPEMKDFRHGFDILVGQIDDALKLANEG--KVKEAQAAAEQLKTTRNAYIQKYL---GDGARPSWVAPALSAVLIVTTAVDVVGNLLVILSVLRNRKLRNAGNLFLVSLALANLVVAFYPYPLILVAIFY-----------------------DGWAFGEEHCKASAFVMGLSVIGSVWNITAIAIDRYLYICHSMAYPLHICLIWLLTVVALLPNAAVVVIHFLLPIAVVSFCYLR-----IWVLVLQARMKKYTCTVCGYIYNPEDGDPDNGVNPGTDFKDIPDDWVCPLCGVGKDQFEEVE------------CLKPSDLRSFL------------------------------------------------------------------------------------------------------------ | |||||||||||||
3 | 2pffB | 0.17 | 0.15 | 4.83 | 1.17 | HHsearch-2 | RPLTLSHG-------SLEHVLLVPTASFFIASQLQ--E--QFNKILPEPTEGAADPTTPAELV--GKFL--------GY---VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGN---DIH------------ALAAKLLQENDTTLVKTKELIKNYITAKRPFDKNSALFRAVAIFGTDDY------FEELRDL----YQTYHVLV-----------GDLIKFS-----------AETLSELIRTTLDEKVFTQGL----NILEWLENPS---NTPDKDYLLSIPICPLIGVIQLAHYVVTAKLLGFTPGELR-SYLLVTAVAIAETDSWESFVRKAITVLFFIGVRCYEAYPNTSLPPSLENNEGVPSPMLSISNLTQEQVQDYVNHLPAG-KQVELVNGKNLVVSGPPQSLYGLNL-TLRKAKAPSGLDQ-SRIPEKFSNRFLPVASPFHSHLLVPASKDLVKSFNAKDI-QIPVYDTFDGSDL-R-VLSGSISERIVDC-IIRLPVKWETTTQFKATHILDGASGLGKVRIVAGTLDINPDDDYGF | |||||||||||||
4 | 5mqfM | 0.09 | 0.08 | 3.16 | 1.11 | Neff-PPAS | ATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNVDAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYAQFEE-----SMIAAKMETASELGREEEDDVDLELRLARFEQLISRRP---LLLNSVLLRQNPHHVHEWHKRVALHQGRGKPHTLWVAFAKFYEDNDDARVILEKATKVNFKQVDDLASVWCQCGELELRHYDEALRLLRKATALPARRAEYFDGSEPVQNRVYKSLKVWSMLTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKY------FEESFKAYERGISLFKWP-NVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYAQLEEEWGLARHAMAVYERATRAVEPAQQYDMFNIYIKRAAEIYGVTIEVLSDEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTIKEMLRIRRSVQATYNTQV--------------------------------------- | |||||||||||||
5 | 2pffB | 0.16 | 0.13 | 4.32 | 1.10 | HHsearch | MD-AYSTRPLTLSHGSLEHVLLVPTASFFIA--SQLQE--QFNKILPEPTEGAADPTTPAEL--VGKFL--------GY---VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGN---DIH------------ALAAKLLQENDTTLVKTKELIKNYITAKRPFDSNSALFRAVGEGNAQLVAIFDDYFEELRDL----YQTYHVLV-----------GDLIKFS-----------AETLSELIRTTLDAKVFTQGL----NILEWLENPS---NTPDKDYL----------LSIPISCPLIGAHYVVTPGEL-RSYLLVTAVAIAETDSWESFVRKAITVLFFIGVRCYEA-YPNTSLPSLENNEGVPSPMLSISNLTQEQVQDYVNHLPAG-KQVELVNGKNLVVSGPPQSLYGLNL-TLRKAKAPSGLDQSRIFSEKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNV------SF----NAKDIQIPFDGSDRVLSGSISELPVKWETTTQFKATHILDF----GPGGAVAGTLDINPDDDYG- | |||||||||||||
6 | 6eznF | 0.09 | 0.08 | 3.09 | 1.44 | PROSPECTOR2 | SCIFGAAISSRLFAVIKFESIIHEFDPWFNNNSFYKFLNWFDDRTWYPLGRVTGGTLYPG--------LMTTSAFIWHALRNWLGLPIDIRNVCVKEIKDAFIAIVPGYISRSVAGSYDNEAIAITLLMVTFMFWIKAQKTGSIMHATCAALFYFYMVSAWGG---------------------YVFITNLIPLHVFLLILMGRYSSKLYSAYTTWYAIGTVASMQIAALGVFGLIQIVAFGDFVKGQISTAKFKVIMQPVSWPAFFFDTHFLIWLFPAGVFLLFLDLKDEHVFVIAYSVLCSYFAGVMCVSAAVALSKIFDIYLDFKIAALLAKLIVSGSFIFYLYLFVFHSTWVTRTAYSSPSVVLPSQTKLALIDDFREAMNSDEDSADRTTLVDNNTWNNTHIAIVGKAMASPEEKSYEGLIGFGGDDINKFLWMIRISEGIWPEEIKERDFYTAEGEYRVDARASEKDFPQLFNGGQATDRVRQQMITPLDVPPLDDDAQGRTLRDVGELTRSSTKTRRS--------------IKRPELGLRV | |||||||||||||
7 | 2pffB | 0.14 | 0.12 | 4.09 | 1.17 | HHsearch-2 | VLLVPTASFFIASQEQFNKILPEPTEGFAADDEPTTPGKFLGVSSLVEPSKVGQ---FDQVLNLCLTEFENCYLEGNDIHALAKLLQEVKTKELIKNYITARIMAKRPFAVG-EGNAQLVAIFGGQGTDDYFEELRDLYQTYHVLVGDLAETLSELIRTTLDAEKLEWLEPDKDYL-LSIPI----SCPLIGVIQLAHYVVTAKLLGFTGELRLVTASFFVSV----RKAITVLFF-----------IGVRCYEAY---------------PNTSLPPSILEDSLENNEGVPSPML----SISNLTQEQVQ-------DYVNKTNSHLPAGKQVEILVSLYGLNLTLRKASGDQSRIPFKLKFSNRFLPVA-SPFHSLLVPLI-NKDL-VKNNVSFNA----KDIQIPVYDTFDGSD----------LRVLSGSISERIVDCIIRLPVKWETTTQFK---ATHILDFGPG---GASGLGVLTHRN-------KDGTGVIVAGTLDINPDDD--------YGFKQGGGGGGGGGGGGGGGGGGGGGGGGG | |||||||||||||
8 | 1w36B1 | 0.09 | 0.08 | 3.02 | 1.33 | PROSPECTOR2 | MSTIAALYLRLLLGLGGSAAFPRPLTVEEIHELRIACLRE------------TTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLL-------RYQACADFWRRHCYPLPREIAQVVFEQALLRDINRYLQGEAPVIKAPPPDIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSAL------------------------------------RSESGEVLAAAIRTRFP-----------VAMIDEFQDTDPQQY--RIFRRIWHHQYAFRGADIFTYMKARSEVHAHYTSAPGMVNSVNKLF-------------SQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQDWLQAGQRGEALLMNGDDARDALTLLEIPSVYLSNRDRLESDKHLPFITNFRVQEQAFYHDRHSFEAVLDLNAAPESAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDCDDDIAWQTAQTGDNQPWQVNDV | |||||||||||||
9 | 5yz0A | 0.07 | 0.07 | 2.85 | 0.97 | SPARKS-K | YEEPLSKLIKTLFPFEAEAY-------RNIEPVYLNMLLEKLCVMFEDGVLMLKSDLLKAALCHLLQYFLKKVYVRNICKALLDVLIEVDAEYLLKMESMEIIEEIQCQTQQENLS----SNSDGISPKRRRLSSSLNPSKRAPKQTEEIKHVDMNQKSIALKQKAESLQISLEYSGLKNPVIEMLEGIAVVLQLQHKSKKKPSVVITWMSTKVLKSCRSLLESVQKLDIDKVVKIYDALIYMQVNSEDHILEDLCGWIYSHSDDGCLKLTTFAANSDSYSPQAQSRCVFLLTLFPRRIFLEWRIRASCVSGFFINSCNRVPKILIDKIVKKEFASILGQLVFYLTSSLTEPFSEHGHVDLFCRNLKATSQHECSSSQLKASVCKPFLFLLKKKIPFIDNLHHLCKHLDFREDETDVKAVLGDPDKDVRVAFSGNIKHILESLGFIKELFVLRMKEAYTHAQISRNNELKDTLILTPFALLSKSASVSGAAYTQYKKPMTALPNTPCQNADVRKQDVAHQREMALNTLSEIALTRTLQVLLPDLAAKAS | |||||||||||||
10 | 5uz5E | 0.10 | 0.07 | 2.68 | 0.99 | FFAS-3D | -----------------------------------------------HNVQRIYEYIIEVPLHQYARFFTSYKKFLNEKNLKTTRNIDIVLRKT-QTTVNEIWQFESKIKQPFFNLGQVL-NDDLENWSRYWMMYIKWLTKKNISDEVVVDIYQKANTFLPLDFKTLRYDFLKRKYRSNNTLFNNIFNETVSRYLKIWILLMTEYLCMLKRHSFKNPKEILEKQTSFTKILETSITNYINNQIDAKVHLQTLINDKNLSIVVVELIKTTWLVLKNNTRKYFNLYQKN--ILIKNSVPFWLTYYKFEKS--NVNFTKLNKFIRELGVEIYLPTTVMNDILTDY--KTFYLTHSNIVTYESSIIDSNTFDPILY---------------------PELKMSNPKYDPVLNTTANVDWHKKTEWK--------EAG-------------------HIGITPQISNSIIECNSGTLIQ-KPISLPNFRNLEKINQVKIND----------------------------------------------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |