Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240 260
| | | | | | | | | | | | | |
| Seq | QTTVTLMYQTNMAGYWRNVTIIWCKNVMNYSLNIMVNNTEGDNVHSTCKIELKPWHFWSRKGYKSFEVEGKPVDVYWDLCSGKFTSGPEPVSDYYVALVSDEEVVLLLGDYRKKAYKRTKSRPALVEPVLFYKKENVFAKKSFATRAKFYQKRKEHDIVVESSTTGLKDPEMWISMDGVVLIHVKNLQWKFRGNQTVLVDKQPVQVMWDVHDWFFSSPGTGHGLFIFKPIPAELADCSDKEGSSHGGDSDTSTGSLYYSTRSPTVTTAEFSLFLYAWK |
1 | 4zchA | 0.11 | 0.10 | 3.66 | 0.91 | SPARKS-K | | LQAQGYGVRIQDAGVYLLYSQVLFQDVFTMGQVVSREGQGRQETLFRCIRSM----PHPDRAYGVFHLQGDILSVIIPRARAKL--NLSPHGTFLGFVKLTQDCLQLIAD---------SETPTIQSYTFVPWLLSFKRGSALEEKILVKETGYFFIYGQVLYTDKTYAMGHLIQRKKVTLFRCIQNMPETLPNNSCYSAGDELQLAIPRENAQISLDGDVTFFGALKLLADSETPTIQWLLSFKRGSALEEKENKILVKE--TGYFFIYGQVLYTDK |
2 | 1fnhA | 0.12 | 0.10 | 3.55 | 0.60 | FFAS-3D | | --APTDLKFTQVTPTS--LSAQWTPPNVQTGYRVRVTPKEKTGPMKEINLAPD---------SSSVVVSGLEVSVYALKGVVTTLENVSPPRRARVTDATETTITISW-----------RTKTETITGFQVDAVPRTIKPDVRSYTITGLQPGTDYKIYLYTLNDN--------ARSSPVVIDASTAIDAPSNLRFLATTPNSLLVSWQ----PPRARITGYIIKY------------EKPGSPPREVVPRPRPGVTEATITGLEPGTEYTIYVIALK |
3 | 5gmtA | 0.16 | 0.10 | 3.47 | 0.56 | HHpred | | -----------------------TKHSSSRALRIFYEKGSYSKVHRGAGFYSRPSAI--SSSVDAMIL---KYDVYFEFGFGIYKGGSNPSSCFSLRLMWRKELYAYIPTNQEGFKDR----D-----DVIAH--STYGQSLGRGKFRFM-NNKWHSISEEVHINGKTDGWVKICVQAQQCYTANHLR--MRNTNSHHLRGMFFS-------TFFGGSEKCYSYFQILTPS----------------------------------------------- |
4 | 3vgzA | 0.12 | 0.12 | 4.06 | 0.74 | MUSTER | | LRKAVGAYEAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFLW-TVNSATAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGDGGNIKLKTAIQNTGKSTGLALDS-----GKRLYTTNAELIADN-KILSRKKLLDDGKEHFFINISLDRQRAFITDSKAVDTRGNAKVAAPE-SLAVLFN--NEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNS-SADGKT-SVKQKSTKQQEATQPDDVIRIAL- |
5 | 3bwsA | 0.08 | 0.05 | 2.10 | 1.24 | CNFpred | | --EDISVIDRKT-KIGLPRGLLLSKD--GKELYIAQFSASNESGGGRLGIYSMD-----EKLIDTIGPPGNKRHIVSGN----------TENKIYVSDMCCSKIEVYDLK----------------EKKVQ---KSIPVF-DKPNTIALSPDGKYLYVSCRGPNHGLVLGKVYVIDTDTVKEFWEAG----NQPTGLDVSNRYLVISDFL----------DHQIRVYRRDGF---------------------------------------------- |
6 | 3tgxA1 | 0.16 | 0.04 | 1.31 | 0.59 | HHsearch-2 | | LQTVICILEMWNL-HPSTLTLTWQDQYTSCSLHRSAHNATH--ATYTCHMDVFHFMGQYSQECGSFLLAES--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
7 | 3a9gA | 0.09 | 0.08 | 3.20 | 0.86 | Neff-PPAS | | -----RLVLISPSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAA--DPRLAQDLSSLAGKILRVDEEGRPPADRNPQGIDWHRASG--VMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDWAPSGASFVLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGDDGGILISTSNRDGRGSLRAGDDKILKIVSE |
8 | 5gmtA | 0.13 | 0.10 | 3.48 | 0.94 | HHsearch | | DDSIST---STKHSSSRALRIFYEKGSYSKGAGFYSRPSASSVDAMILKYDVYE-NFGFGIGGKLPGLFG-------GENEGAYKSGGSPSSCFSLRLMWRKELYAYIPTNQEGFKDR----D-----DVI--AHSTYGQSLGRGKFRF-MNNKWHSISEEVHINGKTDGWVKICVQAQQCYTANHLR--MRNTNSHHLRGMFFSTFFGGSEKSYAAPNDCYSYFQILTPSHAV---------------------------------VG--------- |
9 | 3mbrX | 0.11 | 0.08 | 2.97 | 0.95 | SP3 | | ------------PVPTQGYRVVKRYPHTAFTEGLFYLRTGETGRSSVRKVDLET-------GLQRAEVPPPYAGIVAW-------------RDRLIQLTWRNHEGFVY-DLAT--LTPRARFRYPGEGWALTSD----DSHLYMSVIRKLDTLQVGSIKVTAGGRPLDNLNELEWVNGELLANVWL------TSRIARID-----------------PASGKVVAWIDLQALVPDADALTDSTNDVAEHDGKRWPMLYEIRLTPLPH----------- |
10 | 3c5mA | 0.08 | 0.08 | 3.23 | 0.93 | PROSPECTOR2 | | ADVITLNFETFVDSDVKVTRLTPTDIICGKKLLFAGDFDGNRLETQQAVQLTEGKGDNTFGGFRAFFYVKNELNLKVDLETLEEQVIYTVDEEWKGYGTWDCTKLVGIPLTSWEKFAEFYHTNPTCRLIKVDELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARWLVNEDGSNVESCTHEFWIPDGSAAYVSQTDRVIYKANPETSHLSNFDGSLVGDGCDANIENDPFLYVLNTKAKSAQKHSTSWDVLDGDRQITHPHPSFTGVLFTYK |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|