>PF05895 (633 residues) MAEFWSNNDRGYRIRLWIDQVSQDKVANTSQVRFQLALLNTTTTFAQYQCNAYIEFEGQR LNWSGSPNMLGWYQTIPLIDQTVTINHDSEGKKTFSFSAQFNGSGGWSPRTLTISGNSFT LTDIPRLSSVSVDAGTIGSPVTININRQSSSFKHTVRYAWANKSGTIASNVDTSTTWTIP LDFANDIPNSETGTGTIYVDTYSEGTMIGTQSATLTASVPVSMKPTFTGVSLSDSNTAAR NVVQNANTFIQIMSNIKVSFNGASGSYGSTITGYHAEIVGKNQTTDFNGGTLGIMNYNGT ITVRASVSDSRGRWSDPRDVSVTVLEYFAPSLSFSVVRTGSTSSTLEIIRNARIAPLIVN GIQKNTMKLTFKVSPYGKDAYTTDTGPASGEWLSISSLVNSPANLAGEYAANKSWQVLAI LEDKFTSTSFKAQVPVESVVLSYDRDGLGIGKIREFGALDVAGDIYANNSPIQQYQLTEN NGRPKWMDGKPSVENANLLDEPGQYYLDASATGNPNSQWGYLFHYSNYGKNTDDFKEAIQ TFWGNNGQLFFRHHRWSKIIDDWEPWKEFARNDNTNLINTGWQYAGYEGSFYKRVGDVLT VRYNFTGNGDTITFATIPKEIFTAPQSYMYVIA |
|
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 500 520 540 560 580 600 620 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | MAEFWSNNDRGYRIRLWIDQVSQDKVANTSQVRFQLALLNTTTTFAQYQCNAYIEFEGQRLNWSGSPNMLGWYQTIPLIDQTVTINHDSEGKKTFSFSAQFNGSGGWSPRTLTISGNSFTLTDIPRLSSVSVDAGTIGSPVTININRQSSSFKHTVRYAWANKSGTIASNVDTSTTWTIPLDFANDIPNSETGTGTIYVDTYSEGTMIGTQSATLTASVPVSMKPTFTGVSLSDSNTAARNVVQNANTFIQIMSNIKVSFNGASGSYGSTITGYHAEIVGKNQTTDFNGGTLGIMNYNGTITVRASVSDSRGRWSDPRDVSVTVLEYFAPSLSFSVVRTGSTSSTLEIIRNARIAPLIVNGIQKNTMKLTFKVSPYGKDAYTTDTGPASGEWLSISSLVNSPANLAGEYAANKSWQVLAILEDKFTSTSFKAQVPVESVVLSYDRDGLGIGKIREFGALDVAGDIYANNSPIQQYQLTENNGRPKWMDGKPSVENANLLDEPGQYYLDASATGNPNSQWGYLFHYSNYGKNTDDFKEAIQTFWGNNGQLFFRHHRWSKIIDDWEPWKEFARNDNTNLINTGWQYAGYEGSFYKRVGDVLTVRYNFTGNGDTITFATIPKEIFTAPQSYMYVIA | |||||||||||||||||||
1 | 6fb3A | 0.10 | 0.09 | 3.48 | 1.36 | SPARKS-K | GGLKLVSTQTLELGLMTYNATKSDETGWTTFYDYNVTRPTGVVTSLHREMTIDIENSNRDDDVTVITNLSSVEASYTVVQDRNSYQLCNNGTLRVMISFHSEPHVLAGTVTPTIGRCNISLPMENGLNSILRKEQIKGKVTVFGRKLRVHG-RNLLSIDYDRNIRTEKIYDDHTLRIIYD---------QLGRPFLWLPVSYFFNAGLQRGAMSERTDIDKQGR--IISRMFADGK-VWSYTYLEKSMVLLLQRQYIFEYDSSDRLHAVTMPSMSTHTSVGIFDYSDDGRILKTSFLGTGRQVFYKYGKLSKLSEIVYSTAVTFGYDETTGVLKMVNLQSGGFSRYRKIPLVDKQIYRFSEEGMVNARFDYTYHDNSFKPIISETPLPVDLYRYDEISGKVEHFGKFGVIYDINQIITMTLSKHFDTKEVQYEMFMYWMTVQYDSMGLKLGPYANTTKYTYDYDVAVNDRPTWRYSYD-LNGHLLNPGNSVRLMPLYKIDDDGFLCQRGSD-VFEYNSKGLLTRAYNKANGWNQYRYRASCKTNLGHHLQYFYADL---HNPTRVTHVYNHSNS---EITSLYYDLQGHLFAMESSSVASPLAVFSINGLMIKQLQYTEIYYDSNPDFQLVIG | |||||||||||||
2 | 6e6bA | 0.10 | 0.07 | 2.78 | 1.16 | FFAS-3D | ---FSVSSESG-ELLVLEFEAVAENPLNFYHLSVELE-DINDHTPKFAHTSFELQIPGTRFILSAHDADIGTNSLQNYKYPEMILKTALDREKQKLYHLTLTALDFGHPPLNSTAQIQVLVTDANDNPRVSLPENVYPGTTVLRVVATDSEITFSFSFNLDSNTGEITTL--------------HTLDFEEVKEYSLVLEAKDGGGMIAQCTVEIEVLDENDNVPEVLFDLIMEDAEPGTYI-------------ALLKTRDKDSGRNGEVI-CKLE-GGAPFKILTSSGNTYKLEQNPEYNITIRATDKGDPLSSSSSVTLHIGDVNAPVFLVHVAENNPPGASI-----AQVSASDPDLGANGQVTYYIIASDLEPESLWSTINAQSGVLFAQRAF---------DHEQLRSFQLTLQARDHGLSANVSMRL----LVGDRNDNAPRVLPTLEPDGSALFDMVPRSGYLVTKVVAVDADSGSYHVLQASDPGLFSLGLRTGEVRTARALGDRDSARQRLLVAVRDGGQPPLSATATLHLIF------------------------------------------------------------------------------------------ | |||||||||||||
3 | 6cl6A | 0.17 | 0.05 | 1.71 | 1.10 | HHpred | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LTNHNGPVAGRYFYIQSMFYPDQNGNASQIATSATSEMYVSYAPS----IREWLPQRCDIGGSFTK-----------EAD-GELP-----GGVNLDSMVTSGWWSQSFTGANYPIVRAGLLHVYAASSN------FIYQTYQAYDESFYFRC----RHSNTWFPWRRMWHGGDFNPNRGTASLGASG---WWRDNDTLIRQWGQVTCADADASITFPIPFPTL-CLGGY--- | |||||||||||||
4 | 4aq1A | 0.11 | 0.11 | 3.95 | 1.48 | MUSTER | NTQIADVDFTNFAIDLTVTKATLSRDKKSVEVVVNQEYTITATGIKNLKGETAKELTGKFVWSVQDAVTVALNNSSLKVGEESGLT-DQDGKAKVELTSSNTNIVVVSSGEVSVSAAKVT----------AVKPGT--ADVTAKVTLPDGVLTNTFKVTVTEVP-----VQVQNQGFTLVDNLSNAPQNTVAFNKAEKVTSMFAGETKTVAMYDTKNGDPETKPVDFKDATVRSLNPIIATAAINGSELLVTAGKASFEVTFKDNT----KRTFTVDVKKQDIKVDATSVKLSDEAVVNQKTIKVSAVDQYGKEIKFGTKGKVTVTTNTEGLVIKNVNSDNTIDFDSGNSATDQFVVVATKDKIVNGKVEVKYFKNASDTTPTSTKTADATPVGLDIVAPSEIDVTASTADVDFINFEIYTLDSNGNRLKKVTPTATTLVVEVNGNVLQFELTLLTSSSTVNVDVTADGTKRIPVKYINSASVPASATVATSPVTVKLNSSDNDLTFEEDPTQLVKDEDINEFIAVSKAAKNDGYLYNLVTVKDASGEVIYGLNHDATNGNIWFDEEQAGLAKKFSDVHFDVDFSGTVSSSPSLSDAIQLDAVSFTLVIKSIYVKGADKNLLAAPVSVNVTVT | |||||||||||||
5 | 4p99A | 0.13 | 0.08 | 2.67 | 2.24 | CNFpred | -----------------------------GTVAVSGTATGGDIAE---GDTVTLEINGETYTTTVD--------ANGEWSVDVAGSDLADTAFDAVVTSSDAA---GNTVDTTGS-STHTVDTEATAGTVTVNADVI-GTVAVSGTAT-IAEGDTVTLEINGETYTTTVDANGEWSVDVAGSDLAA-----DTAFDAVVTSSDA--AGNTVDTTGSSTHTVDTEATAGTVTVNAITSDDVINASEAAG----TVAVSGTATGGDIAEG---DTVTLEINGETYTTTVGEWSVDVAG-DTAFDAVVTSSDAAGNTVD-TTGSSTHTVDTATAGTVTVNAIT-SDDVINAAGTVAVSGTATGGDIAEGDTVTLEIN---GETYTTT-VDANGEWSVDVA--------GSDLAADTAFDAVVTSSDAANTVDTTGSSTHTVD-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
6 | 6cl6A3 | 0.15 | 0.03 | 0.95 | 1.59 | HHsearch-2 | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FTKEADGELPG-----GVNLDSMVTSGWWSQSFTGANYPIVRAGLLHVYAASS-N-----FIYQTYQAYGESFYFRC----RHSNTWFPWRRMWHGGDFNPSDYL-LKSGFYWN--------------------A--LPGKPATFPPSAHNH--DVG | |||||||||||||
7 | 5n8pA | 0.09 | 0.09 | 3.32 | 2.82 | Neff-PPAS | GAAQTVTAGAGQNLTATTAAQAANNVAVDGGANVTVASTGVTSGTTTVGANSAASGTVSVSVANSSTTTTGAIAVTGGTAVTVAQTAGNAVNTTLTQADVTVTGNSSTTAVTVTQTAAATAGATVAGRVNGAVTITDSAAASATTAGKIATVTLGSFGAATIDSSALTTVNLSGTGTSLGIGRGALTATPTANTLTLNVNGLTTTGAITDSE------AAADDGFTTINIAGSTASSTIASLVAADATTLNISGDARVTITSHTAAA---LTGITVTNSVGATLGAELATGLVFTGGAGADSILLGATTKAIVMGAGDDTVTVSSATLGDVLVANVNGSSFSADPAFGGFETLRVAGAAAQGSHNANGFTALQLGATAGATTFTNVAVNVGLTVLAAPTGTTTVTLANATGTSVFNLTLSSSAALAAGTVALAGVETVNIAATDTNLTLQATSAKSIVVTGNAGLNLTNTGNTAVTSFDASAVTGTGSAVTFVSANTTVGEVVTIRGGAGADSLTGSATANDTIIGGAGANAIGTSTAFVTITDAAVGDKLDLVGISTNGAIADGAAAVTLGAAATLAQYLDAAAAGDG------SGTSVAKWFQFGGDTYVVVDSSAGATFVSGADAVIKLT | |||||||||||||
8 | 6cl6A3 | 0.15 | 0.03 | 0.95 | 2.11 | HHsearch | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FTKEADGELPG-----GVNLDSMVTSGWWSQSFTGANYPIVRAGLLHVYAASS-N-----FIYQTYQAYGESFYFRC----RHSNTWFPWRRMWHGGDFNPSDYL-LKSGFYWN--------------------A--LPGKPATFPPSAHNHDVGL- | |||||||||||||
9 | 4aq1A | 0.09 | 0.08 | 3.23 | 1.87 | PROSPECTOR2 | AVEVTAVNSTTVKVTFNTQIFAIDNGLTVTKATLSVEVVVNKPFTR--NQEYTITATGIKNLKGETAWSVQDAVTVALNNSSLKVGEDQDGKDKVELTSSNTNIVVVSSGEVSVSAAKVTAVKPGTADVTAKVTLPDGVVLTVTVTEVPVQV--------QNQGFTLVDNLSNA---PQNTVAFNKAEKVT--------SMFAGETKTVAMYDTKNGDPETKPVDFKDATVRSLNPIIATAAINGSELLVTANAKASFEVTFKDNTKRTFTVDVKIKVDATSVKLSDEAVGGGEVEGVNQKTIKVSAVDQYGKEIKFGTKGKVTVTTNTEGLVIKNVNSDNTIDFDSGNSATDQFVVVATKDKIVNGKVEVKYFKNASDNVVNVKADATPVGLDIVAPSEIDVNAPNTASTADVDFINIYTLDSNGNRLKKTTLVGTNDYVEVNGNVLQFKGNDLTSSSTVNVDVTADGTKRIPVKYINSASVPASATVATSPVTVKLNSSDNDLVIDPTQLVKDEDINEFIAVSKAAKNDGYLYNKPLVTVKDASGEVVYGLNHDATNGNIWFDEEQAGLAKKFSDVHFDVDFSSPSLSDAIQLTNSFTLVIKSIYVKGADKDDNNLLAAPVSVNVTVTKGS | |||||||||||||
10 | 6cl6A3 | 0.20 | 0.02 | 0.66 | 0.43 | SAM | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NLDSMVTSGWWSQSFTGANYPIVRAGLLHVYAASSN------FIYQTYQAYDESFYFRC----RHSNTWFPWRRM---------------------------------------------------------------- | |||||||||||||
|
|
References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |