Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180
| | | | | | | | | |
| Seq | KRVEIRAIIEELVLAKAQPTDDASESGYDRNMYLNTLFGYIALVGTSKKAIHYGEVDIVGPKASKKTGIDPRGKMVVSELVGRMRTLSVAVSEGPVKGATLRQMCEPFAQNAYDFLVVMAEMGTYSQLATKMTRSGFKEPQVMFDFASGLDLKALTLQEATVIQAMHSRLFRTEGAKGVFNAQSSIGEQAVEI |
1 | 5fn1A | 0.18 | 0.14 | 4.55 | 1.15 | HHsearch-2 | | TPAEIEALGKIFTAMGL---AA-----NETGPAMWDLARAYADVQSSKSAQLIGATPS---------N----PALSRRALAAQFDR----------INITPRQFCMYFAKVVWNILLDSNIPP------ANWAKLGYQEKFAAFDFFDGTNIRQPNEKELAAHSVAKYGALRQKI------STGNYITTLGEV |
2 | 5a2tA | 0.11 | 0.09 | 3.17 | 1.41 | HHsearch | | NTKQWIGIQAGL-IK-------AGATDANFMKVLLGLSLEAFDRGSSEATTWDGIT----E------G------VEHRAAANAIK----------EANCPIHKVTYYLAKPTFAIRQSKNLPPA------NFAKKNVPYKWCAFDAFDGLYYDAPSEIDRMAYATFTIQIKIANDQKGFNLPNVTQARLPNA- |
3 | 5a2tA | 0.07 | 0.06 | 2.33 | 0.70 | SPARKS-K | | PNTKQWIGIQAGLI-------KAGATDANFMKVLLGLSLEAFDRGSSEATTW---------------DGITEG-VEHRAAANAIKEA----------NCPIHKVTYYLAKPTFAIRQSKNLPPAN------FAKKNVPYKWCAFDADPTCLASELSEIDRMAYATFKTIQIKIANDQK--GFNLNYNPNVTQA |
4 | 5fn1A | 0.16 | 0.13 | 4.28 | 0.87 | FFAS-3D | | TPAEIEALGKIFTAMGLAANE--------TGPAMWDLARAYADVQSSKSA-------------QLIGATPSNPALSRRALAAQFDRI----------NITPRQFCMYFAKVVWNILLDSNIP------PANWAKLGYQEKFAAFDFFDGVGLIRQPNEKELAAHSVAKYGALARQKI----STGNYITTLGEV |
5 | 5a2tA | 0.11 | 0.09 | 3.16 | 0.71 | HHpred | | -TKQWIG-IQAGLIK-------AGATDANFMKVLLGLSLEAFDRGSSEATTWDGIT----E------G------VEHRAAANAIK----------EANCPIHKVTYYLAKPTFAIRQSKNLPPA------NFAKKNVPYKWCAFDAFDGLYYDAPSEIDRMAYATFKTQIKIANDQKGFNNPNVTQARLPNA- |
6 | 5cwjA | 0.13 | 0.10 | 3.62 | 0.67 | MUSTER | | DSEEEQERIRRILK-------EARKSGT--EESLRQAIEDVAQLAKSQDSEVLEEAIRVILRIAKESGSEEA----LRQAIRAVAEIAKEAQD--------SEVLEEAIRVILRIAKESGSEEALRQAIRAVAEIAKEA-----------QDPRVLEEAIRVIRQIAEESGSEEARRQAERAEEEIRRRAQ-- |
7 | 4haxC | 0.11 | 0.09 | 3.40 | 0.61 | CNFpred | | HRIGIRNFVVGMIISMCQ----DDEVFKTQKNLINKSDLTLVQILKQEPQNWPEFIPELIGSSSSSVNVCENNMIVLKLLSEEVFDFSAEQM-TQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLES-------LLRYLHWIPYRYIY--ETNILELLSTKFMTSPTRAITLKCLTE-------- |
8 | 5a2tA | 0.11 | 0.08 | 3.00 | 1.06 | HHsearch-2 | | NTKQWIGIQAGL-IK-------AGATDANFMKVLLGLSLEAFDRGSSEATTWDGIT----E------G------VEHRAAANAIK----------EANCPIHKVTYYLAKPTFAIRQSKNLPPA------NFAKKNVPSKWCAFDAFDGLYYDAPSEIDRMAYATFKTQIKIANDQK------GFNLNYNPNV |
9 | 3c3lA3 | 0.09 | 0.09 | 3.32 | 0.74 | Neff-PPAS | | -YQASTNALMESLGKLRSNYASNMPIQSQIDSLLSLMDLFLPDINLGENGALELKRGIAKNITIYGSGARGIAGKLVSSVTDAIYERMSDVLKARANISAAMAMFGKQAASEAHAEELLARFLKDMETLTSTVPVKRKGVLELQSTGTGAKGKIIKGEQLKALQENMLHFFVEPLRNGITQTV---------- |
10 | 5fn1A | 0.18 | 0.15 | 4.72 | 1.41 | HHsearch | | TPAEIEALGKIF--TAM------GLAANETGPAMWDLARAYADVQSSKSAQLIGAT-PS------------NPALSRRALAAQFDR----------INITPRQFCMYFAKVVWNILLDSNIPP------ANWAKLGYQTKFAAFDFFDGTNIRQPNEKELAAHSVAKYALARQKISTGNYLGEVTRGHMGGA- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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