>PF05819 (433 residues) LEIVTTLDRHKDQLPVAWADLDAKINDPATPPDLKKALTELQKDPRLFFAIGSQGDGKCG GKIKAGDLSKFSAGHAQVAEYATKQAKGYTQNYVASDSPDKTQATVMTESDAMREFYRYS DYLPKDLNQDAFKQLVEGDSNTKKSPPQVIAAAQYFREHPDQWKTLAGDSGSMSTPDFLQ KSASQMHLTAPELNTLDTINSHQDAFFGDGKEVTRDKLDTIIKDDKADPAVRDAAKQLSE DPLLFALLNNSITGYKKPHSFFGGGHTVDSGKISQKDFHQFYDHMSADNKTVETSPTHEA TSPEQKKAVDDMLMGKADQPDIKKKKKDIGTVGKGLHEFLKWDSKIMDWASVGLSALNGI PIIGEMADATALALEGEAQAAQVIDTAMQGGNMSLAWKLAGINMAGAVVGAVGGPTARLG AKGVAKGVTEGAA |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | LEIVTTLDRHKDQLPVAWADLDAKINDPATPPDLKKALTELQKDPRLFFAIGSQGDGKCGGKIKAGDLSKFSAGHAQVAEYATKQAKGYTQNYVASDSPDKTQATVMTESDAMREFYRYSDYLPKDLNQDAFKQLVEGDSNTKKSPPQVIAAAQYFREHPDQWKTLAGDSGSMSTPDFLQKSASQMHLTAPELNTLDTINSHQDAFFGDGKEVTRDKLDTIIKDDKADPAVRDAAKQLSEDPLLFALLNNSITGYKKPHSFFGGGHTVDSGKISQKDFHQFYDHMSADNKTVETSPTHEATSPEQKKAVDDMLMGKADQPDIKKKKKDIGTVGKGLHEFLKWDSKIMDWASVGLSALNGIPIIGEMADATALALEGEAQAAQVIDTAMQGGNMSLAWKLAGINMAGAVVGAVGGPTARLGAKGVAKGVTEGAA | |||||||||||||||||||
1 | 2x1gF | 0.09 | 0.08 | 2.94 | 1.08 | FFAS-3D | VQEILHCTDKPGIYPVEWYMLQDEVFAHKCWEYIKPLYAHLT---RILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLNDYILEILAAMRHPTHWTKLEACIYSFQSVAE----HRQIPRLMRVLA-EIPYEKLNVKLLGTALETMGSYCNWLM--------YIPPAINLLVRNSSMSAQATLGLKELCRD-----------CQLQLKPYA------DPLLNACHASLNTVRLMFSIGKLMSLLRPEE--------------IPKYLDIIVSPCEELQAICQATPAARIRTIFRLNMISTLFSSL-NTPVLLVMQRTMPIFKRIAEMWIDVLEAACSAMKHAITNLRSQPMLQDLCLFIVASFQCCAPTLEISKTAIVFKPLMQQLLRE---FIQHSFKLFESSDTMETFFGCLTQIIKKI- | |||||||||||||
2 | 4gjpA | 0.10 | 0.07 | 2.58 | 1.15 | CNFpred | QRLLPVLCQAH---GLTPQQVVAIAS----HDGGKQALETVQ---RLLPVLCQ------AHGLTPEQVVAIASHD--------------------------------GGKQALETVQALLPVLCHGLTPEQVVAIASNG--------GGKQALETVQRLLPVLCQAH----GLTPQQVVAIASN-----GGGKQALETVQRLLPVLCQ-AHGLTPQQVVAIASN----GGGKQALETVQ---RLLPVLCQ-------------------AHGLTPQQVVAIASNN---------------GGKQALETVQRLLPVLCQAHGL------------TPQQVVAIAKQALETVQRLLPVLCQAHGLTPQQVVAIASNNGGKQALETVQRLL-----PVLCQAHGL-TPEQVVAIASNGGGKQALETVQRLLPVLCQ | |||||||||||||
3 | 5lj3T | 0.05 | 0.05 | 2.41 | 1.11 | Neff-PPAS | SRIFWLFQRCLKSCVRDCDRICLSYLEEMIRHALASSLMKMEMHRKVWDPVIKFEKVESTDEAELINVLLVKGFTIWSSHILERYQQKRNESLATLALTRNITISVYEKYLLNFNYLASLEKLGDNQYEEFMRQMNGPDKWLIGRLDSCGDLLKKSLQQFDRIYNFYLLFEQECSQFILGKLKENDDWTEKLQAHMATFESLINLYDIYLNDVAVETWMKRVSLQKSAAEKCNVYSEAILKI-----DPRKVGTPGSFGRLWCSYGDLYWRSNAISTARKLWTQSLKVP------YPYIEDLEEIYLNWADRELDHVPTNPEILLSLRDYLEAYIFNKTKMAYNTVIDLRPAMAENFALFLQNYEVMESFQVYEKTIPLFPPEIQYELWIEYLEVATSEHIRFLFEKALKNLNGIDCKTIFIAYSVFEERSKS | |||||||||||||
4 | 5h7cA | 0.08 | 0.06 | 2.60 | 1.07 | PROSPECTOR2 | KEQQNAFYEILHLPNLNEEQIQSLKDDPSQSANLLAEAKSLNVNQAVKQLAEKAKEAT--------DKEEVIEIVKELAELAK------------------QSTDSELVNEIVKQLAEVAKEATDKELVIYIVKILAELAKQSTDSELVNEIVKQLAEVAKEAELAKQSTDSELVNEIVKQLEEKEATDKELVEHIEKILEELEQQSASLPNLNEEQIQSLKDDPSQSANLLAEAKSLNVNQAVKQLAEKAKEAT------------------DKEEVIEIVKELAELAK-------QSTDSELVNEIVKQLAEVAKEATD-----------KELVIYIVKILAELAKQSTDSELVNEIVKQLAEVAKEATDKELVIYIVKILAELAKQSTD--SELVNEIVKQLEEVAKEATDKELVEHIEKILEE-LKKQS | |||||||||||||
5 | 5o9zG | 0.10 | 0.09 | 3.45 | 0.83 | SPARKS-K | KKARLLLKSVRETNPHHPPAWIASARLQVARNLIMKGTEMCPKSEDVWLEAARLQPGD----TAKAVVAQAVRHLPQYIRAAELETDIKKRVLRKALEHVPNSVRLWEPEDARIMLSRAVECCPTSVTYENARKVLNKAENIPTDRHIWITAAKLEEANEKIIDRAITNGVEINREQWIQDAEECDRAG-SVATCQAVMRAVIGIGIEEEDRKHMEDADSCVAFPSKKSVWLRAAYFEKNHESLEALLQRAVAHCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQAN---------PNSEEIWLAAVKLESENDESAPTAR-------VFMKSVKLEWVQIRAAQDLCEEALRHYEDFPKLWMMKGQIEEQKEMMEKAREAYNQGLKKCLLSRLEEKRARAILEKSRLKNNPGLWLESVRLEANTLMAKAL | |||||||||||||
6 | 5o9zG | 0.10 | 0.10 | 3.58 | 1.08 | FFAS-3D | -KARLLLKSVRETNPHHWIASARLEEVTGKLQVARNLIMKGTESEDVWLEAARLQPGHLPQSVRIYIRAAELETDIRAKKRVLRKALEHVPNSV---RLWKAAVELEEPEDARIMLSRAVECCPTSVTYENARKVLNKAENIPTDRHIWITAAKLEEANEKIIDRAIANGVEINREQWIQDAEDRAGSVATCQAVMRAVIGIGDSCVAHNALECARAIYAYALFPSKKSVWLRAAYFEKNHESLEALLQRAVAHCPKAEVLW----------LMGAKSKWLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENDEYERARRSSAPTARVFMKSVKLEWVQDNIRAAQDLCEEALRHYEDFPKLWMMKGQIEEQMEKAREAYNQGLKKGQLTRARAI----LEKSRLKNPKNPGLWLESVRLANTLMAKA- | |||||||||||||
7 | 5e37A | 0.12 | 0.07 | 2.34 | 0.49 | HHpred | -----------------------------------DASKKMEELERRFKMADVDGN----GHIDREELRNLLESMES------GE-------------VYMMSQHWLPEDELERCMEQYDVNKDGVISFEEFKQIIYDGLLLEGTLAEY----------ESAFKAVDKSGGTIGATELSKLFSLGNPVSLEKLVDL--MQMY-DK-DDSG-QIEFPEFLLMFRNSLLD--LKDMTTYMTL--------G-------SSGSLVDAVEGDMTLIFSEEELDALISANP--DKLVVVFLTWCRPCKGMQRPVQKLAEHYKDHIVFVK------------------------------------------------------------------------------------------------------------- | |||||||||||||
8 | 1st6A | 0.09 | 0.09 | 3.47 | 0.92 | MUSTER | SKDTEAMKRALALIDSKMNQAKGWLRDPNAPPG-DAGEQAIRQILDEAGKAGELCAGKERREI-LGTCKTLGQMTDQLADLRARGQGATPMAMQKAQQVSQGLDLLTAKVENAARKLEAMTNSKQA--IAKKIDAAQNWLADPNGGSEGEEHIRGIMSEARKVAELCEEPK--ERDDILRSLGE----ISALTAKLSDLRRHGKGDSPEARALAKQIATSLQNLQSKTNRAVANTRPVKAAVHLEGKIEQAQRWIDNPTVDRGVGQAAIRGLVARQDLLAKCDRVDQAAQLADLAARGEGESPQARAIAAQLQDSDTTTPAPSDTPNREEVFEERAANFENHAARLGATAEKAAAVGANKTTVEGIQATVKSARELTPQVVSAARILLRNPGMKNQWIDNVEKMTGLVDEAIDTKSLDASEEAIKKDLDKCKV | |||||||||||||
9 | 4oszA | 0.11 | 0.08 | 2.77 | 1.15 | CNFpred | QALLPVLCQ---AHGLTPEQVVAIASN----GGGKQALETVQ---RLLPVLCQ------AHGLTPQQVVAIASNG--------------------------------GGKQALETVQRLLPVLCHGLTPQQVVAIASNG--------GGKQALETVQRLLPVLCQAH----GLTPQQVVAIASN-----PGGKQALETVQRLLPVLCQ-AHGLTPQQVVAIASN----GGGKQALETVQ---RLLPVLCQA-------------------HGLTPQQVVAIASHD---------------GGKQALETVQRLLPVL------------HGLTPEQVVAIASNGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLL-----PVLCQAHGL-TPQQVVAIASNGGGRPALESIVAQLSRPDP | |||||||||||||
10 | 1vt4I | 0.11 | 0.11 | 3.80 | 0.50 | HHsearch-2 | KDILSVFEDVQDMPILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEMVQKFVEEV-LRINYKFLMSPIKTEQRQPSMMRLYNDNQVFAKYQALLELRPAKNVLGSGKTWV-ALDVCLSYKLNLKNCNSPETVLEMLDPNWTS---RSDHSSNIKLRIIQAELRRLLKSKPENLQVTDFLSAATTSMTLTPDEVKSLLLKYRPQDLPREVL-TTNPRRLSIIAESLANCDKLTTIIESSLNEPEYRKMFDRL--------S-----VFPPSAHIPTILLIWFSDVMVVVNKSLVEKQPKESTIYLELSIVDHYIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP-ER-------MTLFRMVFLDRFLESGSILNTLQ-QLKFYKPYICDNDPKYRLVNAILDFLPKIENLICSKYTRIALMAIFEEAHKQVQ | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |