>PF05692 (450 residues) FVKQVINKTDIVSTTNMAPQPGNYSFVGYSVDVSGGTGNQNNAPNWNFAKRIVWTNTNNK NRPLANQSENSVPLTDVSWIYSLTGAGAKYTLTFNYYGPKTGYLYFPYKLVKASDEVELQ YKLNDADPKAIEFKKSSATQAPAGESETLSSPDQRKPAGSTPSNPERRAAESSADSNPTN QENSQSNQSAPETSAMNETPTVSDINVAKVTLTDLKFGKNKIEFSIPTGVSNKVAPMIGN MYLTSSDTEANRDKIYDDLFGNTSVQQENQTAVTVDLLKGYSLATSFREYIRQFTNLKTS GDMMRTSPTVYLVGLIGGSQGRTDDSGITNIQNSPNVDNDARTFTIYVNAPVSGDYHISG AYLQGSNTARSLKFSTGTSGSNNEVTVTGLMQSNWTTLGHFDTKMTSTTVSPTDTPMNRT LTLNKGLNKIVVSGVNNGDTPFIGNLTFTL |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | FVKQVINKTDIVSTTNMAPQPGNYSFVGYSVDVSGGTGNQNNAPNWNFAKRIVWTNTNNKNRPLANQSENSVPLTDVSWIYSLTGAGAKYTLTFNYYGPKTGYLYFPYKLVKASDEVELQYKLNDADPKAIEFKKSSATQAPAGESETLSSPDQRKPAGSTPSNPERRAAESSADSNPTNQENSQSNQSAPETSAMNETPTVSDINVAKVTLTDLKFGKNKIEFSIPTGVSNKVAPMIGNMYLTSSDTEANRDKIYDDLFGNTSVQQENQTAVTVDLLKGYSLATSFREYIRQFTNLKTSGDMMRTSPTVYLVGLIGGSQGRTDDSGITNIQNSPNVDNDARTFTIYVNAPVSGDYHISGAYLQGSNTARSLKFSTGTSGSNNEVTVTGLMQSNWTTLGHFDTKMTSTTVSPTDTPMNRTLTLNKGLNKIVVSGVNNGDTPFIGNLTFTL | |||||||||||||||||||
1 | 1rmgA | 0.10 | 0.05 | 1.97 | 1.23 | CNFpred | -----------------------------------------------------------------------------ATAIQLD-----GIIYRTGTASGNMIAVTDTTDFELFSKGAVQGFGYVYGARILRLTD------------------------------------------------------------------VTHFSVHDIILVDAP--AFHFTMDTCS------DGEVYNMAIRGGNE-----GGLDGIDV---------WGSNIWVHDVEVTNKDECVTVKSP------------ANNILVESIYCNW---------------------SGGCAMGSLG-DVTDIVYRNVYTWSS--NQMYMIKSNGSGTVSNVLLENFIGHGNAYSLDIDGYWSSMTAVAGDGVQLNNITVKN-RPPIRVVCSDT---APCTDLTLED | |||||||||||||
2 | 3j8dA | 0.10 | 0.09 | 3.45 | 1.21 | Neff-PPAS | -------NIVLTQSPASLAVS-----LGQRATISCRA---SESVDSFIY----WYQQKPGQPPKLLIYLASNLESGVPARFSGSGSETDFTLTIDSVETDDAATYYCQQNNEDPYTFGGGTKLEIKQVQLLQPGAELVKPGASMKLSCKASGYTFTNWWMHWVRLRPGRGLEWIGRIDPNSDVNKYNEKFENRASLT-VDKHSSTAYMQLTSED--SAIYYCARWFFPWYFDVWGTG------TTVTVSRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSTHKTSTSPIVKSFNRSAKTTAPSVYPLAPVCGGTTGSSVTLGLVKGYFPEPVTLTWNSGSLSSGVHTFPALLQSGLYTLSSSVTVTSNTWPSQTITCNVAHPASSTK-----VDKKI | |||||||||||||
3 | 4uxeA | 0.11 | 0.08 | 3.04 | 1.24 | PROSPECTOR2 | PSQQTVNGSLTLTQQTNLSAPLVSS----STGEFGGSLAANRTFTIRNTGAPTSIVFEKGPASG----ANPAQSSIRVWGNQFGGGSDTTRSTVFEVGDDTSHHF---------------YSQRNKDGNIAFNINGTVPININASGLNVNGTATFGRSVTAN----------------------------------GEFISKSANAFRAIN-------GDYGFFIRNDAS--------NTYFLLTAA-------------GDQTGGFNGLRPLLINNQSGQITIGE--------GLIIAKGVTINSGGLT------VNSRIRSQGTKTSDLYTRAPTSDTVGFWSIDINDSNQFPGYFKVEKTNEVTGL---PYLERGEEVKSPGTLTQFGNTLDSLYQDWITYPTTP----EARTTRWTRTWQSSFVQVFDGGPSDNATGNIGNVRIVV | |||||||||||||
4 | 4lo4B | 0.12 | 0.10 | 3.51 | 0.96 | SPARKS-K | --------------TQRVLPYSNGLYVINKGDIRTNDKDLEAGSSGSIIQPRPLFTTSNDTKFSQQNVQLFNTST----------SLFKFVEEICIKAYNTYEKYELIDYQNGSVNKAEYYLPSLGYCEVTNAPSPESEVVKMQVAEDGFIQNGPEEEIVVGVIDPSENIQEINTAISDNYTYNIPGIVNNN-------PTVNTTGIYKINAQNNLP--SLKIYEAIGSGNRNF--QSGNL---CDDD----IKAINYITGFDSP--NAKSYLVVLLNKDKN-------YYIRVPQTSSNIENQEEGDMNSSVNII---DNLNSTGAHYYTRQSPDV-HDYISYEFTI--PGN----------FNNKDTSNIRLYTSY--NQGIGTLFRVTETNLINIQNLHLLNNTNS-----------IRLLNGAIKVEVTELNN----Y--NIRLHI | |||||||||||||
5 | 2w87A | 0.15 | 0.04 | 1.43 | 0.54 | FFAS-3D | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ALLLQEAQAGFCRVD----------GTIDNNHTGFTGSGFANT----------------------NNAQGAAVVWAIDATSSGRRTLTIRYANGGTANRNGSLVINGGSN-GNYTVSLPTTGAWTTWQTATI----------------DVDLVQGNNIVQLSATTAEGLPNIDSLSVV- | |||||||||||||
6 | 5x7oA | 0.17 | 0.12 | 4.10 | 0.46 | HHpred | ---------------SYDYESGSSFEQRLAAQDLSSGGSGSYTPDVQHYVLKIHGRA--GSAVT----AGGSALTGSGWASG--------------RDIYGDVTYVKLPAAS-GSATVVEVSGSAPAATHAIYEVEDASRSGAPTINTNHSSGSGFVDKLVPGAAVTVYAPVSGDELRYANGSVYVNAARVQQLSLADTGAWSQWGTQTTTL-PLTAGQNIITYKYDSDAGDT-----GG---------VNLDYI-------RVPF--APTQAEYAAES---------------AK------------------LWGGAGTSQDHYKGAAFVDNLTGVGAEASF--DVYAPSAGTYNLSLRYANGTGSTKTLSAIVNGGA---ASTVTLTSGMNWNLWNEH----------------TMTATLTAGRNTISFRRNSSGN-VNLDRLAVSA | |||||||||||||
7 | 2cn2A | 0.13 | 0.12 | 4.19 | 0.89 | MUSTER | WEKTILPFKGGNPGRSGER-PNDNRYLGT----RCGNGSTDYGVTW----SKVESFPNPGTIIGDKSSSTPGNPTKTIYVGVADKNESIYRSTWKAVQPKG---LLPHHGVLASNGKGQVWKFNTRTGEWIDITPIPYSSSDNRFCFAGLAVDRQNPDISNAWWPDEYSTDGGATWKNIWEWGYPERILHYEIDISAAPWLDWGTEKQLPEINPKLGWIGDIEID-PFNSDRYVTG--ATIYGCDNLTDWDRGGKVKIEVKATGIEECAVLDLVSP-PEGAPLVGDLVGFV--HDDLKVGPKKHVPSYSSGTGIDYAELVPFSYDGGRNWFQPPNEAPNSVGGGSVAVAADAKSVIWTPEAVTTDNGNS----WKVCTNLGGAVVASDRVNGKKYGKF-TDGGLTFTDTKAPQLPKSVNKIKAVPG-GHVWLAAREGGNVDTAHVVGFGK | |||||||||||||
8 | 4d8mA | 0.09 | 0.06 | 2.26 | 1.23 | CNFpred | -----------------------LQQLDIATYSTNNSNN-----CHPYGLRLSYTD-------------------GSRYDYGDN------QPDFTTSNNNYCHNSYTAPITLV--NARHLYNAKLQNVESLVVSTV--------------------GGSGSCICDAWINYLRPP--------------------QTSKNESRPDQKINVLYP-----------ITETVNKGTGGNLGVISAYVPMEL--VPENVIGDVN----DTKLPLTQLKGFPFEKYGSEYNRGISLVREWI------------NGNNAVKLSN-----------------------SQSVGIQITNQTKQKYEIRCRYASKG--DNNVYFNVDLNPFRNSISFGSTESVVGVQGGKYILK------------SITTVEIPAGSFYVHITNQGS-SDLFLDRIEFVP | |||||||||||||
9 | 3a23A2 | 0.22 | 0.04 | 1.34 | 0.98 | HHsearch-2 | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAYAATSTGRYTVTAASTGLNVVDVAYTNNTSSARTATLQVNGQT---ATTVSFPPTGSAG------T-------------VSVEVSLSKGSNTLALSGG-----PATEGITVRP | |||||||||||||
10 | 2bk1A | 0.11 | 0.10 | 3.58 | 1.18 | Neff-PPAS | ------------------------------LASNGDKIESFVPKEGKKTGNKFIVVERQKRSLTTSPVDISIIDSVNDRTY--PGALQLADKAFVENRPTI--------LMVKRKPININIDLPGLKGEN-----SIKVDDPTYGKVSGAIDELVSKWNEKYSSTARTQYSESMVYSKSQISSALNVNAKVLENSLGVDFNAVANNEKKVMILAYKQIFYTVSADLPKNPSDLFDDSVTFNDLKQKGVSNEAPPLMSNVYGRTIY-----VKLETTSSSKDVQAAFKALIKNTDIKNSQQYKDIYENSSFTAV-VLGGDAQEHNKVVTKDFDEIRKVIKDNATFS-----TKNPAYPISYTSVFKDNSVAAVHNKTDTEYSKGKINLDHSGAYVAQFEVAWDEVSYDGNYQDKTAHYSTVIPLEANARNIRIKAISEYDVPLTNNINVSI | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |