Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240
| | | | | | | | | | | | |
| Seq | ASIAFRWRKRGAQGYLQPVTHVHRIALKDLQGVDRQKALVEQNTRQFVNGVPANNVLLTGARGTGKSSLVKAVLNKYAPKGLRVIEVEKQDLLDLPEIVDLVSARPERFILFCDDLSFEAEEAGYKALKAVLDGSVAAPSENVLVYATSNRRHLMPEFMQENLEARRVGDEIHPGETVEEKVSLSERFGLWVSFYPFSQDEYLSIVFHWLEYFQAPIPNRETVRQEALQWALQRGSRSGRVAWQFARDWAGR |
1 | 6nyyA | 0.21 | 0.18 | 5.67 | 1.55 | SPARKS-K | | --------FSVGETTAKVLKDEIDVKFKDVAGCEEAKLEIMEFVNFLKGAKIPKGAILTGPPGTGKTLLAKATAGEAN---VPFITVSGSEFLEVRDLFALARKNA-PCILFIDQIDAVGRENTLNQLLVEMDGF--NTTTNVVILAGTNRPDILDPALL------------RPG-----------RFDRQIFIGPPDIKGRASIFKVHLRPLKLDSTLEK--DKLARKLASLTPGFSGADVANVCALIAAR |
2 | 2qz4A | 0.22 | 0.17 | 5.26 | 1.84 | FFAS-3D | | -----------------------GVSFKDVAGMHEAKLEVREFVDYLKEAKVPKGALLLGPPGCGKTLLAKAVATELAMAGAEFVEVIGGGAARVRSLFKEARA-RAPCIVYID-----EIEQTLNQLLVEMDGM--GTTDHVIVLASTNRADLDGALMRPG------------------------RLDRHVFIDLPTLQERREIFEQHLKSLKLTQS----STFYSQRLAELTPGFSGADIANICNEAA-- |
3 | 6matA | 0.18 | 0.15 | 4.90 | 3.51 | HHpred | | ------------ASKREGFSTIPDTTWSHVGALEDVRKKLEMSIIGPIKIKPAAGILLWGPPGCGKTLVAKAVANES---KANFISIKGPELLNVRQLFSRAKS-SAPCILFFDQMDALVPARVVNTLLTELDGVG--DRSGIYVIGATNRPDMIDEAIR------------RPG-----------RLGTSIYVGLPSAEDRVKILKTLYRNTVQGTT-DADLEK--VALDLRCTGFSGADLGNLMQAAAQA |
4 | 5z6qA | 0.21 | 0.17 | 5.44 | 1.21 | MUSTER | | --------NLANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRAPARGLLLFGPPGNGKTMLAKAVAAES---NATFFNISAASLTSVRALFAVAREL-QPSIIFIDEVDSLLCRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDE-------------------------AVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLT-QKELAQLARM-----DGYSGSDLTALAKDAALG |
5 | 1j7kA | 0.16 | 0.12 | 3.96 | 1.32 | CNFpred | | --------------------------LDEFIGQENVKKKLSLALEAAKMREVLDHVLLAGPPGLGKTTLAHIIASELQ---TNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLN-KAVEELLYSAIEDFQ--DIQPFTLVGATTRSGLLSSPLRS-------------------------RFGIILELDFYTVKELKEIIKRAASLMDVEI------EDAAAEMIAKRSRGTGRIAIRLTKRVRDM |
6 | 6az0A | 0.20 | 0.15 | 4.83 | 0.58 | HHsearch-2 | | -------------------------KFDDVCGCDEARAELEEIVDFLKDGKLPKGVLLTGPPGTGKTLLARATAGEA---GVDFFFMSGSEFDEIRDLFAQARS-RAPAIIFIDQLDAIGGKQTLNQLLVELDGFS--QTSGIIIIGATNFPEALDKALT------------RPG-----------RFDKVVNVDLPDVRGRADILKHHMKKITLADNDP-------TIIARGTPGLSGAELANLVNQAAVY |
7 | 2qz4A | 0.19 | 0.15 | 4.72 | 1.17 | Neff-PPAS | | -----------------------GVSFKDVAGMHEAKLEVREFVDYLKSPKVPKGALLLGPPGCGKTLLAKAVATEAQ---VPFLAMAGAEFVEVRSLFKEARARA-PCIVYIDEI-----EQTLNQLLVEMDGM--GTTDHVIVLASTNRADILDGALMRP-----------------------GRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELT----PGFSGADIANICNEAALH |
8 | 6epcM | 0.18 | 0.15 | 5.04 | 0.88 | HHsearch | | PGDLVGVNKDLPTEKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNIQPPKGVLMYGPPGTGKTLLARACAAQT---KATFLKLAGPQLVQVRDAFALAKE-KAPSIIFIDELDAIGTQRTMLELLNQLDGFQ--PNTQVKVIAATNRVDILDPALL------------RSG-----------RLDRKIEFPMPNEEARARIMQIHSRKMNVSPD-V-----NYEELARCTDDFNGAQCKAVCVEAGM- |
9 | 3h4mA | 0.20 | 0.17 | 5.33 | 1.69 | PROSPECTOR2 | | A---------------MEVDERPNVRYEDIGGLEKQMQEIREVVELPLGIEPPKGILLYGPPGTGKTLLAKAVATET---NATFIRVVGSELVKVKDIFKLAKE-KAPSIIFIDEIDAIAVQRTLMQLLAEMDGF--DARGDVKIIGATNRPDILDPAIL------------RPG-----------RFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVLKAICTEAGMNAIRELRDYRKAVEKIMEKKKVK |
10 | 3cf1B | 0.21 | 0.17 | 5.29 | 2.46 | SAM | | ----------------ETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEMTPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELLTVREIFDKARQ-AAPCVLFFDELDSIAADRVINQILTEMDGMS--TKKNVFIIGATNRPDIIDPAIL------------RPG-----------RLDQLIYIPLPDEKSRVAILKANLRKSPVAK------DVDLEFLAKMTNGFSGADLTEICQRAC-- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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