>PF05655 (329 residues) LFHRSVDDVLGPRERRFFGEGFKRAEHRLRHIFVTYGPEGRAQADARVSVDYPSDWSRKG DADQRPHLSTVDVLVIGVQLSEVHLAHVLGLSPDQRARAVLQRVRIKAGRSPVEEDLAGF AASAQLVATVPSDRVVGLFLSTVECVVGTLRMRCEIRHEAGVPHQAAGSYDSLRGLLGDP RLRLFGEGFTSRRQLVEDVVIDPQARQAAAAVRVIRDEDAPSPATGLEGAHHDRASAIDA FVIGLQLGQVLLYTLDDVPRAQSNTLWMRETILELDPLRPPLPATAPVTTRLDRCKRLET GKGDIWRSADIVGEFLGVRLRCSVAHRLP |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | LFHRSVDDVLGPRERRFFGEGFKRAEHRLRHIFVTYGPEGRAQADARVSVDYPSDWSRKGDADQRPHLSTVDVLVIGVQLSEVHLAHVLGLSPDQRARAVLQRVRIKAGRSPVEEDLAGFAASAQLVATVPSDRVVGLFLSTVECVVGTLRMRCEIRHEAGVPHQAAGSYDSLRGLLGDPRLRLFGEGFTSRRQLVEDVVIDPQARQAAAAVRVIRDEDAPSPATGLEGAHHDRASAIDAFVIGLQLGQVLLYTLDDVPRAQSNTLWMRETILELDPLRPPLPATAPVTTRLDRCKRLETGKGDIWRSADIVGEFLGVRLRCSVAHRLP | |||||||||||||||||||
1 | 3hrqB | 0.09 | 0.08 | 2.86 | 1.03 | SPARKS-K | ---------------------EIKTTTTLHRVVEETTKPLGATLVVETDIS--------RKDVARGHCTPSFYADIAMQVGQYSMQRLRAGG-----LVDVSDMVVD--KALVPHGKGPQLLRTTLTMEWPPKAAATTRSAKVKFATYTEHASCTVRFTSDAHAKGQFMRYNRKTGYKLMSSMAFNPDYML----LDYLVLNEAENEAASGVDF-SLGSSEGTFAAH----------PAHVDAITQVAGFAMNANDNVDIEKQVYVNHGWDSFQIYQPLDN-SKSYQVYTKMGQNDL---------VHGDVVVLDGE-QIVAFFRGLTL | |||||||||||||
2 | 5e1vA | 0.09 | 0.06 | 2.47 | 1.47 | CNFpred | -----------------------------------------KKITKQLTLSLKNPFIYHHVVYGQNVLPGLAYIDIIYQIFREHGFS--------CSELQLRNLSIYQ--PLTAEQDAVIVLNIQCAEKK-----EGQWQITAKGIEEKLYMKADMHADSPAIFEETLDLSQIKASA----ELVHSEYM----KAKGCIYEEE--DGVLLELSLGSE---------AMLHAEGFMFHPTLIDGSGVGANHLLTSLLKGEQRLYLPLFYESFSASALL-------QTDCMTRIKR-SSVRRE--KELIYVTLEFFNASGEKVAELKNFTS | |||||||||||||
3 | 3g3lA | 0.11 | 0.08 | 2.87 | 1.07 | PROSPECTOR2 | PATSSFNEQVNYKAEGYAADGYYPVKRQVY----LNQVSDGQTSVATVNVALVSVEAAVIPPVVPPTDPETDINEGEATKVADKAVEVAKPSESTVTDL--------AGTTATPEEKKALD-------ETLEAGGKVGETTPEVLADGSILAITPVK--------------------------------------FTNPIQDAPAVPYFYNEGCELTGDVKEVAAPVAVA--------------ADIQKAFLSNA----AKALNNAGFVQKIGYTRISVLNGYSILGYTIKG------------QLVSKKLTFLISGKYYEGIVSYQYS | |||||||||||||
4 | 5bp2A | 0.13 | 0.10 | 3.48 | 1.01 | SPARKS-K | ---------------------PSVSVHPLLG-SHVVLPQEPEEHLWQGDVGTEAPWLSDHQVAVLP-------GAAYCEMALAAVTPVLG------DTGEVHDLKF---HDML--LLDATPVWVSAAVTAPG-------TAEFGVETHTQRATAVLRGDVDAERPAAHSIDALLAAHPNGTVGIHGAAFAG----LSEAYVAAAEPTVVAAVALPGRSGQRG--------YTVHPALLDACFQSVIAHPEVQNIASGM------LLPLGVRRLRAYG---STRNVRYCLSRIVKADS-------FGVEADLELLDADGTVLLSAMGLQL | |||||||||||||
5 | 3hrqB | 0.14 | 0.11 | 3.75 | 0.91 | FFAS-3D | --------------------------HRVVEETTK---PLGATLVVETDISRKDGL-------ARGHCTPSFYADIAMQVGQYSMQRLRA-----GGLVDVSDMVV---DKALVHGKGPQLLRTTLTMEWPPKAAATTRSAKVKFATYFEHASCTVRFTSDSVSEYKTHIRQLHDGHAKGQFMRFNPDYM----LLDYLVLNEAENEAASGVDFSLGSS--------EGTFAAHPAHVDAIT---QVAGFAMNANDNVDI--EKQVYVNHGSFQIYQPLDN-SKSYQVYTKMGQNDLVHG----DVVVLDIVAFFRGLTLRSVPRGAL- | |||||||||||||
6 | 3hrqB | 0.11 | 0.09 | 3.10 | 0.74 | MUSTER | --------------EIKTTT----TLHRVVEETTK---PLGATLVVETDISRKDVLAR-DGIPLCT---PSFYADIAMQVGQYSMQRLRAGGL-----VDVSDMVVDKA--VPHGK-GPQLLRTTLTMEWPPKAAATTRSAKVKFATYTEHASCTVRFTSDAQLKSKTHIRQLHDGHAKGQFM-FNPDYML----LDYLVLNEAENEAASGVDFSLGSSEGTFAA------------PAHVDAITQVAGFAMNANDNVDIEKQ--HGWDSFQIY---QPLDNSKSYQVYTKMG---------QNDLVHGDVVVLDGEAFFRGLTLRSVP | |||||||||||||
7 | 6mbhA | 0.13 | 0.10 | 3.56 | 1.37 | CNFpred | ---------------------------------VLDPAPGARCFTGTVSSDRP-AYLGEHWVYDAIVVPGVTYLEMALAAASRLLPGN------AADTLIVEDVTVWS-PLVLRAGA-PARLRLRSEDE-------RFEIHSAEPE-WTRHATGRIARRQGQLPRLDGEAVELDAYYERM-RIYYGPRL----RNIRHLERRG--REAIGHVCLQG-----------EEAQESASYELHPALLDACFQCVFALIYAHESHREFVPLGCARIELRARG------REVRVHLRLHPPRSTDH---NQTHTADLRLFDMEGRLVASVDALQL | |||||||||||||
8 | 2pfcA | 0.12 | 0.05 | 1.83 | 0.48 | HHsearch-2 | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------PIAEELLARV-----LEPYSCGCRYLIDAQYSATEDSVLAYGNFTIGE---SAYI----RSTGHFNAVELILCFNQLAYSAFAPANEEIRHQLSSMLIRKASSRFRKPLNPQ--KFSARLLCRDLQ--V-IWRYLKVPCVIEFWDNGASGEIELAALNI | |||||||||||||
9 | 3hrqB | 0.10 | 0.09 | 3.13 | 0.98 | Neff-PPAS | ----------------------IKTTTTLHRVVEETTKPLGATLVVETDISRKDGLARGHLVDGIPLCTPSFYADIAMQVGQYSMQRLRA-----GGLVDVSDMVVDKALVP--HGKGPQLLRTTLTMEWPPKAAATTRSAKVKFATYFASCTVRFTSDAQSVSEYKTHIRQLHDGHAKGQFMRFNPDYML----LDYLVLNEAENEAASGVDFSLGS-----------SEGTFAAHPAHVDAITQVAGFAMNANDNVDIEKQVYVNHGWDSFQIYQPLDN-SKSYQVYTKMG---------QNDLVHGDVVVLDGEAFFRGLTLRSVP | |||||||||||||
10 | 3e4bC3 | 0.21 | 0.03 | 0.87 | 0.46 | HHsearch | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NAQQQISQW-----QA----AGY-----------PEAGLAQVLLYRTQGTYDQHLDDVALNTT---------------------------------------------------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |