Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180
| | | | | | | | | |
| Seq | RIERIRAPRWIGYSRTQAILAKLEDLLVWPKSHRMPNMLLVGDTNNGKTMLVQRFRTRHPAHDNPQGQGVRVPVLMIQAPPVPDEGRFYNAILELLFAPYKPNDRVDKKQAQVIKLLRHVDLRMLVIDEIHHILAGNLNRQRSFLNVIKYLGNELQVPIVGIGTKDAFRAIQTDPQLANRFEPALLPRWT |
1 | 2p65A | 0.20 | 0.17 | 5.58 | 1.39 | SPARKS-K | | LARAGKLDPVIGRD---TEIRRAIQILS---RRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPD-SLKGRKLVSLD--------------LSSLIAGAKYRGDFEERLKSILKEVQDAEGVVMFIDEIHTVVGAGAVAALDAGNILKPMLARGELRCIGATTSEYRQFIEKDKALERRFQQILVEQPS |
2 | 2p65A | 0.20 | 0.16 | 5.22 | 2.47 | FFAS-3D | | --------------------TEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQGD---------------VPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGVVMFIDEIHTVVGAGAEGALDAGNILKPMLARGELRCIGATTVSEYRQIEKDKALERRFQQILVEQPS |
3 | 1fnnA1 | 0.21 | 0.17 | 5.53 | 1.63 | HHpred | | -----------REQQLQQLDILLGNWLRNP-GHHYPRATLLGRPGTGKTVTLRKLWELYK-D------KTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGSRDEFLALLVEHLRERDYMFLVLDDAFNL-------APDILSTFIRLGQEFRIALVIVGHNDAVL-NNLDPSTRGIMGKYVIR--- |
4 | 1jbkA | 0.23 | 0.19 | 6.12 | 1.38 | MUSTER | | RAEQGKLDPVIGR------DEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEG-LKGRRVLALD--------------MGALVAGAKYRGEFEERLKGVLNDLAKQGNVILFIDELHTMVGAM-----DAGNMLKPALARGELHCVGATTLDEYRQYIEDAALERRFQKVFVAEPS |
5 | 1fnnA | 0.18 | 0.16 | 5.12 | 1.12 | CNFpred | | ---------------LQQLDILLGNWLRNPG-HHYPRATLLGRPGTGKTVTLRKLWELYKD-------KTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRGLSRDEFLALLVEHLRERLYMFLVLDDAFNLA---PDILSTFIRLGQEADKLFRIALVIVGHNDAVLNN-LDPSTRGIMYVIRFSPYT |
6 | 4xgcD | 0.13 | 0.13 | 4.35 | 0.45 | HHsearch-2 | | RLQRDYTTLRGYAKERSNVRLLLQRTAE---MGESNSLLLLGPRGSGKTTLINSVLADLLPNKS---FGENTLIVHLDGNLHTDDRVALKSITVQMQLENAVFGSFAENLAFLLQCLK-SKSVIFILEEFDLFCAHHQTLLYNLFDVSQS--AQAPICVLGVTCLDVIELL--EKRVKSRFSQVFLPSLR |
7 | 2p65A | 0.19 | 0.17 | 5.44 | 1.74 | Neff-PPAS | | LARAGKLDPVIG------RDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQGD---------------VPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGVVMFIDEIHTVVGAVAEGALDAGNILKPMLARGELRCIGATTVSEYRQFIEDKALERRFQQILVEQPS |
8 | 2p65A | 0.20 | 0.17 | 5.57 | 0.62 | HHsearch | | LARAGKLDPVIGRD---TEIRRAIQILS---RRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVP-DSLKGRKLVSLDLS--------------SLIAGAKYRGDFEERLKSILKEVQDAGQVVMFIDEIHTVVGAGAVGALDAGNILKPMLARGELRCIGATTVSEYRFIEKDKALERRFQQILVEQP- |
9 | 2p65A | 0.20 | 0.17 | 5.58 | 1.44 | PROSPECTOR2 | | QARAGKLDPVIGR---DTEIRRAIQILS---RRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSL-KGRKLVSLD--------------LSSLIAGAKYRGDFEERLKSILKEVQDAEQVVMFIDEIHTVVGAGAVAELDAGNILKPMLARGELRCIGATTVSEYRQFEKDKALERRFQQILVEQPS |
10 | 1r6bX2 | 0.25 | 0.22 | 6.87 | 1.56 | SAM | | -TNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQG--------DVPEVMADCT----------IYSLDIGAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAAGQVDAANLIKPLLSSGKIRVIGSTTYQEFSIFEKDRALARRFQKIDITEPS |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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